RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 HOXB5P09067 269 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 BSPH1Q075Z2 132 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 FIP1L1Q6UN15 594 aaKnown RBP18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 FAM219AQ8IW50 185 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 OR8H1Q8NGG4 311 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 RTN4IP1Q8WWV3 396 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 KIRREL1Q96J84 757 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 WFIKKN1Q96NZ8 548 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 SLC2A9Q9NRM0 540 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 RDH8Q9NYR8 311 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 METRNQ9UJH8 293 aa18.9■□□□□ 0.62
PDLIM2-203ENST00000339162 TPRP12270 2363 aaKnown RBP18.89■□□□□ 0.62
PDLIM2-203ENST00000339162 RFPL4AA6NLU0 287 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 RFPL4AL1F8VTS6 287 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 L7N2F9 121 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 EGR1P18146 543 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 ZNF497Q6ZNH5 498 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 DHRS9Q9BPW9 319 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 METTL8Q9H825 291 aaKnown RBP18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 RASL12Q9NYN1 266 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 TRAPPC2LQ9UL33 140 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 MPC2O95563 127 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 SRSF4Q08170 494 aaKnown RBP18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 ZNF880Q6PDB4 577 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 GSG1LQ6UXU4 331 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 SECTM1Q8WVN6 248 aa18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 USB1Q9BQ65 265 aaKnown RBP18.89■□□□□ 0.61
PDLIM2-203ENST00000339162 COL6A6A6NMZ7 2263 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 TRBV6-6A0A0A6YYG2 114 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 IGKV1D-13A0A0B4J2D9 117 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 IGKV1-13P0DP09 117 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 CD200P41217 278 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 AP2S1P53680 142 aaPredicted RBP18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 CASP6P55212 293 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 RPS23P62266 143 aaKnown RBP18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 PCSK4Q6UW60 755 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 MOGAT3Q86VF5 341 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 ASB13Q8WXK3 278 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 GPHA2Q96T91 129 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 COMMD9Q9P000 198 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 PTAFRP25105 342 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 HLA-DRB3P79483 266 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 SLC38A6Q8IZM9 456 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 ITLN1Q8WWA0 313 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 MEGF10Q96KG7 1140 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 OR10C1Q96KK4 312 aa18.88■□□□□ 0.61
PDLIM2-203ENST00000339162 KIAA2026Q5HYC2 2103 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 DIRAS3O95661 229 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 OR5AC1P0C628 307 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 MDH2P40926 338 aaKnown RBP18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 CA7P43166 264 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 MZT1Q08AG7 82 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 ADAM5Q6NVV9 412 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 RAB18Q9NP72 206 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 CACNA1AO00555 2505 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 ARID1AO14497 2285 aa18.87■□□□□ 0.61
PDLIM2-203ENST00000339162 A0A0B4J2A0 478 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 HMSDA8MTL9 139 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 CCL21O00585 134 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 GNRHRP30968 328 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 SELENOVP59797 346 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 AESQ08117 197 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 OPCMLQ14982 345 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 MRPL24Q96A35 216 aaKnown RBP18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 RSRP1Q9BUV0 290 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 NAA60Q9H7X0 242 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 TREM2Q9NZC2 230 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 OR1A1Q9P1Q5 309 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 SHPKQ9UHJ6 478 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 GLS2Q9UI32 602 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 MEX3AA1L020 520 aaKnown RBP18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 UCP3P55916 312 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 COL10A1Q03692 680 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 SMIM21Q3B7S5 101 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 ST6GALNAC3Q8NDV1 305 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 PIK3IP1Q96FE7 263 aa18.86■□□□□ 0.61
PDLIM2-203ENST00000339162 IGHV3OR15-7A0A075B7D8 119 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 FAM90A27PA6NNH2 459 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 M0R233 179 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 KCNAB3O43448 404 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 TEX261Q6UWH6 196 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 ZNF546Q86UE3 836 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 GCSAMQ8N6F7 178 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 TPRX1Q8N7U7 411 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 NUP37Q8NFH4 326 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 OR4A4PQ8NGN8 299 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 U3KQ87 197 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 CTXN2P0C2S0 81 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 LMO1P25800 156 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 FGL1Q08830 312 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 SHEQ5VZ18 495 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 C11orf87Q6NUJ2 197 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 ZNF818PQ6ZRF7 136 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 LDLRAD3Q86YD5 345 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 CD177Q8N6Q3 437 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 OR10J5Q8NHC4 309 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 MFFQ9GZY8 342 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 KCNIP3Q9Y2W7 256 aa18.85■□□□□ 0.61
PDLIM2-203ENST00000339162 CACNA1DQ01668 2161 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms