RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MRGPRX3Q96LB0 322 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 RNF7Q9UBF6 113 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 N4BP2Q86UW6 1770 aaPredicted RBP11.1□□□□□ -0.63
SDC3-201ENST00000336798 CRYBB2P43320 205 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 TMEM33P57088 247 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 ROM1Q03395 351 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 ISOC2Q96AB3 205 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 ZNF488Q96MN9 340 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 SLC35B3Q9H1N7 401 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 SSC5DA1L4H1 1573 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 K7ERU9 68 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 RPL34P49207 117 aaKnown RBP11.1□□□□□ -0.63
SDC3-201ENST00000336798 KCNMB1Q16558 191 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 MAP1LC3CQ9BXW4 147 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 NTMQ9P121 344 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 STARD10Q9Y365 291 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 HERVK_113P61574 105 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 CD226Q15762 336 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 TPRX1Q8N7U7 411 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 ZNF441Q8N8Z8 693 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 RGP1Q92546 391 aaPredicted RBP11.1□□□□□ -0.63
SDC3-201ENST00000336798 OR51M1Q9H341 326 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 TAF1P21675 1872 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 SLX4Q8IY92 1834 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 IGKV3OR2-268A0A0C4DH90 116 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 CISD3P0C7P0 127 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 ZNF665Q9H7R5 613 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 PARP11Q9NR21 331 aa11.1□□□□□ -0.63
SDC3-201ENST00000336798 MRPS18BQ9Y676 258 aaKnown RBP11.1□□□□□ -0.63
SDC3-201ENST00000336798 TTC3P53804 2025 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 WNT3P56703 355 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SH2D5Q6ZV89 423 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 ADAMTS17Q8TE56 1095 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 PTP4A1Q93096 173 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 MRGPRFQ96AM1 343 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 FLRT3Q9NZU0 649 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 PAFAH1B2P68402 229 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SSX1Q16384 188 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 UBE2L6O14933 153 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 PLPP2O43688 288 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SRSF10O75494 262 aaKnown RBP11.09□□□□□ -0.63
SDC3-201ENST00000336798 HLA-GP17693 338 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 CTF1Q16619 201 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 C16orf82Q7Z2V1 217 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 ST6GAL2Q96JF0 529 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SEC11CQ9BY50 192 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 HSF4Q9ULV5 492 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 CNTRLQ7Z7A1 2325 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 FXYD1O00168 92 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 ZNF253O75346 499 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 EIF3GO75821 320 aaKnown RBP eCLIP11.09□□□□□ -0.63
SDC3-201ENST00000336798 CTGFP29279 349 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 CCL8P80075 99 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SPANXN1Q5VSR9 72 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 TWIST1Q15672 202 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 MESTQ5EB52 335 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 LEMD1Q68G75 181 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 OR1N2Q8NGR9 330 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 CLN8Q9UBY8 286 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 MTFP1Q9UDX5 166 aa11.09□□□□□ -0.63
SDC3-201ENST00000336798 SUCLG1P53597 346 aaKnown RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 HLA-DRB5Q30154 266 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 TMEM171Q8WVE6 324 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 PTX4Q96A99 478 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 RBFOX3A6NFN3 312 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 MGAT2Q10469 447 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 RRN3P1Q2M238 152 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ANKRD55Q3KP44 614 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ZNF385CQ66K41 422 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 TBX15Q96SF7 602 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ZNF552Q9H707 407 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 MRM2Q9UI43 246 aaKnown RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 TOGARAM1Q9Y4F4 1720 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 FBLL1A6NHQ2 334 aaKnown RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 NDUFS8O00217 210 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ADRA2AP08913 450 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 INHBBP09529 407 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 COL10A1Q03692 680 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 IL13RA2Q14627 380 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 JMJD6Q6NYC1 403 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 STARD4Q96DR4 205 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 TOPAZ1Q8N9V7 1692 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 LINC00862A6NCI5 91 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 CRISP2P16562 243 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 OR2J1Q9GZK6 312 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 WBP1LQ9NX94 342 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 IGHV5-10-1A0A0J9YXX1 117 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 FAM181BA6NEQ2 426 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ZNF324O75467 553 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 GP1BAP07359 652 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 SCGB1A1P11684 91 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 HLA-DRB3P79483 266 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 ZNF770Q6IQ21 691 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 MYOZ3Q8TDC0 251 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 OPN3Q9H1Y3 402 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 HEXA-AS1Q9H8Q6 139 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 SLC25A10Q9UBX3 287 aaPredicted RBP11.08□□□□□ -0.64
SDC3-201ENST00000336798 MPC1Q9Y5U8 109 aa11.08□□□□□ -0.64
SDC3-201ENST00000336798 SYNGR2O43760 224 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 KIR2DL1P43626 348 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms