RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TMEM50BP56557 158 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 TESK1Q15569 626 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 SMIM21Q3B7S5 101 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 NUDCD2Q8WVJ2 157 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 SEH1LQ96EE3 360 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 PECRQ9BY49 303 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 CBLN4Q9NTU7 201 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 A0A1W2PPR1 153 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 SWI5Q1ZZU3 235 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 PCGF3Q3KNV8 242 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF260Q3ZCT1 412 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 OR4C16Q8NGL9 310 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 OR51J1Q9H342 316 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 DEGS1O15121 323 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 PDCD6O75340 191 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF205O95201 554 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 ADH4P08319 380 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 FGF2P09038 288 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 FUT3P21217 361 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 PMELP40967 661 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 TRAPPC6BQ86SZ2 158 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 Q8NFD4 153 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 OR56B4Q8NH76 319 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 CCL17Q92583 94 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 RDH5Q92781 318 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 NUDT16L1Q9BRJ7 211 aaKnown RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 FAAP24Q9BTP7 215 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 RHOFQ9HBH0 211 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 RNF7Q9UBF6 113 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 MEIKINA0A087WXM9 373 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 TMEM82A0PJX8 343 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 UBE2QL1A1L167 161 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 FAM221AA4D161 298 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 LRRC30A6NM36 301 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 PTBP3O95758 552 aaKnown RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 CYB5R3P00387 301 aaPredicted RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 CFDP00746 253 aaPredicted RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 SOD3P08294 240 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 GSTP1P09211 210 aaKnown RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 GATA4P43694 442 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 MECP2P51608 486 aaKnown RBP8.45□□□□□ -1.06
HMGB3-201ENST00000325307 ERVK11-1P61568 191 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 BTN1A1Q13410 526 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 ARL6IP1Q15041 203 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 OR5T2Q8NGG2 359 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 GPX8Q8TED1 209 aa8.45□□□□□ -1.06
HMGB3-201ENST00000325307 DNASE2O00115 360 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SIRPB1O00241 398 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SH2D1BO14796 132 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CLDN1O95832 211 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 LPLP06858 475 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CD55P08174 381 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SULT1A3P0DMM9 295 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SULT1A4P0DMN0 295 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 MPV17LQ2QL34 196 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SP5Q6BEB4 398 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 ACP7Q6ZNF0 438 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 ERGIC1Q969X5 290 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CLEC4MQ9H2X3 399 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CHD3Q12873 2000 aaKnown RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 IGHV3OR15-7A0A075B7D8 119 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 NAP1L6A6NFF2 107 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SERPINE3A8MV23 424 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 MFNGO00587 321 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 ARPC1BO15143 372 aaKnown RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 S100A9P06702 114 aaKnown RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 EGR1P18146 543 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CHATP28329 748 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 GPX4P36969 197 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 CEBPDP49716 269 aaPredicted RBP8.44□□□□□ -1.06
HMGB3-201ENST00000325307 IL13RA2Q14627 380 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 FAM201AQ5SY85 155 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 TGIF2LYQ8IUE0 185 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 DEFB108BQ8NET1 73 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 DYRK2Q92630 601 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SULT4A1Q9BR01 284 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 GPR61Q9BZJ8 451 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 RAB1BQ9H0U4 201 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 SDHAF2Q9NX18 166 aa8.44□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A10PA6NDY2 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A18PA6NE21 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A16PA6NEW6 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A20PA6NIJ5 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A8PA6NJQ4 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A7PA6NKC0 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A22PA8MWA6 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A12PA8MX19 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A5PA8MXJ8 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A23PA8MXZ1 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 MCRIP1C9JLW8 97 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 NDUFB6O95139 128 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A15PP0C7V4 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A13PP0C7W8 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A14PP0C7W9 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 FAM90A24PP0C7X0 464 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 CD80P33681 288 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 SPIN3Q5JUX0 258 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 LINC00596Q86U02 117 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 BPIFB2Q8N4F0 458 aa8.43□□□□□ -1.06
HMGB3-201ENST00000325307 GCSAMQ8N6F7 178 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms