RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CXorf65A6NEN9 183 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 NPIPB9F8W1W9 429 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 PAGE4O60829 102 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 PEBP1P30086 187 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 TCL1AP56279 114 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR1C1Q15619 314 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR2M7Q8NG81 312 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR4B1Q8NGF8 309 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 BLNKQ8WV28 456 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 TP53RKQ96S44 253 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ATG101Q9BSB4 218 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 PARD6GQ9BYG4 376 aaPredicted RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 MTCH2Q9Y6C9 303 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ZFC3H1O60293 1989 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 CD82P27701 267 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 BRS3P32247 399 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 GALNSP34059 522 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 MDH2P40926 338 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 IER3P46695 156 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 AGFG1P52594 562 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 HES1Q14469 280 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 CD226Q15762 336 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 DEFB109BQ30KR1 87 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ZNF718Q3SXZ3 478 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 D2HGDHQ8N465 521 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR10X1Q8NGY0 326 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 SLC26A1Q9H2B4 701 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ARID2Q68CP9 1835 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 CTXND1A0A1B0GTU2 59 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 KCNAB3O43448 404 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 CRYAAP02489 173 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 HSPB1P04792 205 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 VSIG8P0DPA2 414 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 RPS4XP62701 263 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 GNB1P62873 340 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 SMIM21Q3B7S5 101 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 MESTQ5EB52 335 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ACER2Q5QJU3 275 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 WDR74Q6RFH5 385 aaPredicted RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 DHRS13Q6UX07 377 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 C1orf210Q8IVY1 113 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 SDHCQ99643 169 aaPredicted RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 SLC7A10Q9NS82 523 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR5AC2Q9NZP5 309 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 KLK13Q9UKR3 277 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 TDRD15B5MCY1 1934 aaKnown RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 PLPP3O14495 311 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 PITX3O75364 302 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 MPZL1O95297 269 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 HOXB1P14653 301 aaPredicted RBP10.12□□□□□ -0.79
VPS39-201ENST00000318006 MMP16P51512 607 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 ZNF343Q6P1L6 599 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 OR2I1PQ8NGU4 316 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 TAAR3PQ9P1P4 343 aa10.12□□□□□ -0.79
VPS39-201ENST00000318006 MT-CO3P00414 261 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 FAM157BP0CG42 384 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 ZFP36L2P47974 494 aaKnown RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 TGIF2LXQ8IUE1 241 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 FAM219AQ8IW50 185 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 HSPB9Q9BQS6 159 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 EGLN1Q9GZT9 426 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 ZNF638Q14966 1978 aaKnown RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 NKX2-6A6NCS4 301 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 NGFP01138 241 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 SRP14P37108 136 aaKnown RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 FZD5Q13467 585 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 Q5BKY6 102 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 LEMD1Q68G75 181 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 UBALD1Q8TB05 177 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 CES1P1Q9UKY3 287 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 PLXNA1Q9UIW2 1896 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 A0A1W2PQD3 144 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 A8MXK9 166 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 TRDCB7Z8K6 153 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 OR2A4O95047 310 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 BCL3P20749 454 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 TAS2R60P59551 318 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 SRSF5Q13243 272 aaKnown RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 MRPL54Q6P161 138 aaKnown RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 ZAR1Q86SH2 424 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 ATG4DQ86TL0 474 aaPredicted RBP10.11□□□□□ -0.79
VPS39-201ENST00000318006 OR8B12Q8NGG6 310 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 OR2A7Q96R45 310 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 DCAF16Q9NXF7 216 aa10.11□□□□□ -0.79
VPS39-201ENST00000318006 HRKO00198 91 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 PPYP01298 95 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 IGHV4-34P06331 123 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 CSRP3P50461 194 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 H2BFSP57053 126 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 TFF2Q03403 129 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 ADAMTS17Q8TE56 1095 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 UQCR10Q9UDW1 63 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 ICAM5Q9UMF0 924 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 IFITM10A6NMD0 228 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 SSPNQ14714 243 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 Q56UQ5 140 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 HOGA1Q86XE5 327 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 SGMS2Q8NHU3 365 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 GPR27Q9NS67 375 aa10.1□□□□□ -0.79
VPS39-201ENST00000318006 PLA2G3Q9NZ20 509 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms