RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C9orf40Q8IXQ3 194 aa6.77□□□□□ -1.32
LIMCH1-201ENST00000313860 OR11H7Q8NGC8 314 aa6.77□□□□□ -1.32
LIMCH1-201ENST00000313860 SLC25A40Q8TBP6 338 aa6.77□□□□□ -1.32
LIMCH1-201ENST00000313860 MARVELD3Q96A59 401 aa6.77□□□□□ -1.32
LIMCH1-201ENST00000313860 H3BRM9 83 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 IFITM1P13164 125 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SP6Q3SY56 376 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 GFI1BQ5VTD9 330 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 Q7L0L9 218 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 DDB2Q92466 427 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SLX1AQ9BQ83 275 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SLC2A4RGQ9NR83 387 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 NPIPB8E9PQR5 432 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 NPIPB9F8W1W9 429 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 RPS15AP62244 130 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 TNXAQ16473 311 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 DEFB110Q30KQ9 67 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SSMEM1Q8WWF3 244 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 FAM163AQ96GL9 167 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 LOXL4Q96JB6 756 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 TAS2R4Q9NYW5 299 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 GRIFINA4D1Z8 144 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 M0R1B8 84 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 LINC00869P0C866 280 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF117Q03924 483 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SIX1Q15475 284 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF414Q96IQ9 312 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 DIRC2Q96SL1 478 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SEBOXQ9HB31 216 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 GPR35Q9HC97 309 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 C7orf77A4D0Y5 90 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF840PA6NDX5 716 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 SRRM4A7MD48 611 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM238C9JI98 176 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 H3BQ15 152 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 K7ERS5 55 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 CLDN7O95471 211 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 TBX18O95935 607 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 IL11P20809 199 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 GLIPR1P48060 266 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ELOCQ15369 112 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 MBOAT2Q6ZWT7 520 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 CHST13Q8NET6 341 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ARPC1AQ92747 370 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 LRRC61Q9BV99 259 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF337Q9Y3M9 751 aa6.77□□□□□ -1.33
LIMCH1-201ENST00000313860 TCRBV7S3A2A0A539 114 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 ODAMA1E959 279 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 YBX1P67809 324 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 C1orf61Q13536 156 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 C11orf44Q8N8P7 122 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 OR5P3Q8WZ94 311 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 KISS1RQ969F8 398 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 PSORS1C1Q9UIG5 152 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SPATA31D1Q6ZQQ2 1576 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 GAGE12HA6NDE8 117 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 B5MCH6 92 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SS18L1O75177 396 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 ACYP1P07311 99 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 CRYBB3P26998 211 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF273Q14593 569 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SAMD5Q5TGI4 173 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 CDC42EP5Q6NZY7 148 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 AAED1Q7RTV5 226 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 PQLC3Q8N755 202 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 NANOGP1Q8N7R0 232 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 NKAIN3Q8N8D7 197 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SCAMP5Q8TAC9 235 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 LPAR4Q99677 370 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 C1QTNF2Q9BXJ5 285 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SAP30LQ9HAJ7 183 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 STARD5Q9NSY2 213 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 ST3GAL6Q9Y274 331 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 MRPS17Q9Y2R5 130 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 HEG1Q9ULI3 1381 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 CXorf49A8MYA2 514 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHV3-13P01766 116 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHV3-7P01780 117 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 GNLYP22749 145 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 CD300EQ496F6 205 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SLC25A26Q70HW3 274 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 C16orf92Q96LL3 132 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 KCNE5Q9UJ90 142 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 A0A1B0GWA3 101 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 H7C1H1 209 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 RER1O15258 196 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 PNLIPP16233 465 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 DYNLT3P51808 116 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 LINC00158P58513 81 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 GUCA2AQ02747 115 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 EBLN2Q6P2I7 272 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 GLIS1Q8NBF1 620 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 PFN4Q8NHR9 129 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 PPIL1Q9Y3C6 166 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 MST1RQ04912 1400 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 A0A1W2PQM1 296 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 CTXN2P0C2S0 81 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 FOLR3P41439 243 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 RRADP55042 308 aa6.76□□□□□ -1.33
LIMCH1-201ENST00000313860 SYNJ2BPP57105 145 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms