RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 POC1AQ8NBT0 407 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 ANGPTL6Q8NI99 470 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 LRRC20Q8TCA0 184 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 ASB13Q8WXK3 278 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 RBPMSQ93062 196 aaKnown RBP9.75□□□□□ -0.85
CUX1-202ENST00000292538 PLSCR4Q9NRQ2 329 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 TAS2R3Q9NYW6 316 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 RNF150Q9ULK6 438 aa9.75□□□□□ -0.85
CUX1-202ENST00000292538 DIDO1Q9BTC0 2240 aaKnown RBP9.75□□□□□ -0.85
CUX1-202ENST00000292538 IGHV1-18A0A0C4DH31 117 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 ZSCAN5BA6NJL1 495 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 K7EPK0 472 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 MPPED1O15442 326 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 MLNRO43193 412 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 B3GALNT1O75752 331 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 CNOT4O95628 575 aaKnown RBP9.74□□□□□ -0.85
CUX1-202ENST00000292538 ECI1P42126 302 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 TMEM187Q14656 261 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 IZUMO4Q1ZYL8 232 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 ZNF474Q6S9Z5 364 aaPredicted RBP9.74□□□□□ -0.85
CUX1-202ENST00000292538 FAM180AQ6UWF9 173 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 FAM71E2Q8N5Q1 922 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 RNASE11Q8TAA1 199 aaKnown RBP9.74□□□□□ -0.85
CUX1-202ENST00000292538 LHFPL5Q8TAF8 219 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 PLPPR1Q8TBJ4 325 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 MRPL30Q8TCC3 161 aaKnown RBP9.74□□□□□ -0.85
CUX1-202ENST00000292538 ASF1BQ9NVP2 202 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 PURGQ9UJV8 347 aaKnown RBP9.74□□□□□ -0.85
CUX1-202ENST00000292538 POLDIP2Q9Y2S7 368 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 NCOR2Q9Y618 2525 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 PTPRQQ9UMZ3 2332 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 LRP5LA4QPB2 252 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 PROB1E7EW31 1015 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 CEACAM4O75871 244 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 IGHV3-13P01766 116 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 IGHV3-7P01780 117 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 OMGP23515 440 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 AESQ08117 197 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 PRSS54Q6PEW0 395 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 CCDC28AQ8IWP9 274 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 SAXO1Q8IYX7 474 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 RFESDQ8TAC1 157 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 FAM215AQ9Y5M1 114 aa9.74□□□□□ -0.85
CUX1-202ENST00000292538 IGHV2OR16-5A0A0B4J2B6 119 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 KIR2DS1A0A191URI9 304 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 OR5H1A6NKK0 313 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 PRSS47A8MTI9 375 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 SPRY3O43610 288 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 NAPSAO96009 420 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 IGKV3-15P01624 115 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 OR8U9P0C7N5 309 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 KIR2DS4P43632 304 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 SNTB1Q13884 538 aaKnown RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 EDDM3AQ14507 147 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 KIR2DS1Q14954 304 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 ZNF718Q3SXZ3 478 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 Q6ZS92 163 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 CCDC71LQ8N9Z2 235 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 OR8U1Q8NH10 309 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 MUCL1Q96DR8 90 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 PLK3Q9H4B4 646 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 SPACA1Q9HBV2 294 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 ATP23Q9Y6H3 246 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 SH2D1BO14796 132 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 MBPP02686 304 aaPredicted RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 PET100P0DJ07 73 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 RPL12P30050 165 aaKnown RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 GABRA2P47869 451 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 SRSF4Q08170 494 aaKnown RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 RPL7L1Q6DKI1 246 aaKnown RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 RGS7BPQ6MZT1 257 aaPredicted RBP9.73□□□□□ -0.85
CUX1-202ENST00000292538 LIAT1Q6ZQX7 453 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 BEND4Q6ZU67 534 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 CCDC36Q8IYA8 594 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 LGI3Q8N145 548 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 OR8G5Q8NG78 346 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 PIK3IP1Q96FE7 263 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 LINC00052Q96N35 136 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 KIF25Q9UIL4 384 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 COL6A6A6NMZ7 2263 aa9.73□□□□□ -0.85
CUX1-202ENST00000292538 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 MED19A0JLT2 244 aaPredicted RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 NKX2-6A6NCS4 301 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 AGPAT2O15120 278 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 PSPNO60542 156 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 TUSC2O75896 110 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 SNAPC5O75971 98 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 HAND1O96004 215 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 FAM87AP0C7U9 286 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 GUSBP1Q15486 140 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 OR2B11Q5JQS5 317 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 Q6ZR03 302 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 CMTM1Q8IZ96 169 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 CNTNAP3BQ96NU0 1288 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 CNTNAP3Q9BZ76 1288 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 SESN1Q9Y6P5 492 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 PTPRBP23467 1997 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 IGHV3OR15-7A0A075B7D8 119 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 DEFB108AA8MXU0 73 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 COX5AP20674 150 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms