RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 SMUG1Q53HV7 270 aa14.32□□□□□ -0.12
CPSF4-201ENST00000292476 DMRTC1Q5HYR2 192 aa14.32□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF286AQ9HBT8 521 aa14.32□□□□□ -0.12
CPSF4-201ENST00000292476 JKAMPQ9P055 326 aa14.32□□□□□ -0.12
CPSF4-201ENST00000292476 TMEM218A2RU14 115 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 MSGN1A6NI15 193 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 OR5B21A6NL26 309 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 TSPAN4O14817 238 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 SPRY1O43609 319 aaPredicted RBP14.31□□□□□ -0.12
CPSF4-201ENST00000292476 ANGPTL7O43827 346 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 SRSF1Q07955 248 aaKnown RBP eCLIP14.31□□□□□ -0.124e-7■■■■□ 23.2
CPSF4-201ENST00000292476 SRSF7Q16629 238 aaKnown RBP eCLIP14.31□□□□□ -0.12
CPSF4-201ENST00000292476 IAH1Q2TAA2 248 aaPredicted RBP14.31□□□□□ -0.12
CPSF4-201ENST00000292476 TMEM200AQ86VY9 491 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 OR5T2Q8NGG2 359 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 LRRC46Q96FV0 321 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 CYYR1Q96J86 154 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 SULT4A1Q9BR01 284 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 FAAP24Q9BTP7 215 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 MS4A7Q9GZW8 240 aaPredicted RBP14.31□□□□□ -0.12
CPSF4-201ENST00000292476 PLEKHA2Q9HB19 425 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 LPAR3Q9UBY5 353 aa14.31□□□□□ -0.12
CPSF4-201ENST00000292476 FLNCQ14315 2725 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 IGHV1-18A0A0C4DH31 117 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 DEDDO75618 318 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 ATG12O94817 140 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 CRYAAP02489 173 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 HOXB5P09067 269 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 FAM157CP0CG43 387 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF728P0DKX0 622 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF718Q3SXZ3 478 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 C10orf91Q5T1B1 145 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 Q6ZS49 121 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 MYPOPQ86VE0 399 aaPredicted RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 SAXO1Q8IYX7 474 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 OR10AD1Q8NGE0 317 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 HDHD3Q9BSH5 251 aaPredicted RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 OR2J1Q9GZK6 312 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 OR51B6Q9H340 312 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 NAA60Q9H7X0 242 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 HIVEP3Q5T1R4 2406 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 RTTNQ86VV8 2226 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 IGKV1-12A0A0C4DH73 117 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 PQLC2LA1A4F0 135 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 TRIM77I1YAP6 450 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 IGKV1D-12P01611 117 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 HKR1P10072 659 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 ATF4P18848 351 aaPredicted RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 RBM11P57052 281 aaKnown RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 S100A10P60903 97 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 SVBPQ8N300 66 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 OR51F2Q8NH61 342 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 SLC25A40Q8TBP6 338 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 TMED6Q8WW62 240 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 SMIM8Q96KF7 97 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 NKX6-2Q9C056 277 aaPredicted RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 C12orf4Q9NQ89 552 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 PRR13Q9NZ81 148 aa14.3□□□□□ -0.12
CPSF4-201ENST00000292476 CARHSP1Q9Y2V2 147 aaKnown RBP14.3□□□□□ -0.12
CPSF4-201ENST00000292476 POLEQ07864 2286 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 IGHV2OR16-5A0A0B4J2B6 119 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 IQCF6A8MYZ5 107 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 SFTPBP07988 381 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 FUT3P21217 361 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 GCH1P30793 250 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 PIGPP57054 158 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 GNG3P63215 75 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 FAM27E3Q08E93 113 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 TMEM187Q14656 261 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 ABCA11PQ4W5N1 156 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 GGNBP1Q5YKI7 109 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 OR2T2Q6IF00 324 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 ZNF573Q86YE8 665 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 MKXQ8IYA7 352 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 FBXL14Q8N1E6 418 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 OR5P3Q8WZ94 311 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 MOB3AQ96BX8 217 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 MICU1Q9BPX6 476 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 SYT3Q9BQG1 590 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 ZC4H2Q9NQZ6 224 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 GSKIPQ9P0R6 139 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 ST3GAL6Q9Y274 331 aa14.29□□□□□ -0.12
CPSF4-201ENST00000292476 DNASE2O00115 360 aaPredicted RBP14.28□□□□□ -0.12
CPSF4-201ENST00000292476 GEMIN2O14893 280 aaKnown RBP14.28□□□□□ -0.12
CPSF4-201ENST00000292476 KCNAB3O43448 404 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 JTBO76095 146 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 GLP1RP43220 463 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 PRSS12P56730 875 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 PJVKQ0ZLH3 352 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 FAM185AQ8N0U4 392 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 CCDC71LQ8N9Z2 235 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 BHLHE23Q8NDY6 225 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 KLF14Q8TD94 323 aaPredicted RBP14.28□□□□□ -0.12
CPSF4-201ENST00000292476 MARS2Q96GW9 593 aaKnown RBP14.28□□□□□ -0.12
CPSF4-201ENST00000292476 NARS2Q96I59 477 aaKnown RBP14.28□□□□□ -0.12
CPSF4-201ENST00000292476 RTL8AQ9BWD3 113 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 RHOFQ9HBH0 211 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 POMT1Q9Y6A1 747 aa14.28□□□□□ -0.12
CPSF4-201ENST00000292476 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.27□□□□□ -0.12
CPSF4-201ENST00000292476 H7C1Q1 480 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms