RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ASCL1P50553 236 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 BLOC1S1P78537 153 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 NHLH2Q02577 135 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 ALKBH6Q3KRA9 238 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 OR2J1Q9GZK6 312 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 TLNRD1Q9H1K6 362 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 KIR2DS1A0A191URI9 304 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 TUSC2O75896 110 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 SLC34A2O95436 690 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 ZNF14P17017 642 aaPredicted RBP17.09■□□□□ 0.33
VPS53-201ENST00000291074 WT1P19544 449 aaPredicted RBP17.09■□□□□ 0.33
VPS53-201ENST00000291074 KIR2DS4P43632 304 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 IL24Q13007 206 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 KIR2DS1Q14954 304 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 SRSF7Q16629 238 aaKnown RBP eCLIP17.09■□□□□ 0.33
VPS53-201ENST00000291074 TBC1D28Q2M2D7 210 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 IL34Q6ZMJ4 242 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 Q6ZRG5 221 aa17.09■□□□□ 0.33
VPS53-201ENST00000291074 GTF3C1Q12789 2109 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 PRSS44E7EML9 344 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 GPR137BO60478 399 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 ZNF44P15621 663 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 PCSK4Q6UW60 755 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 ZNF695Q8IW36 515 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 GMPPAQ96IJ6 420 aaPredicted RBP17.08■□□□□ 0.33
VPS53-201ENST00000291074 PARD6AQ9NPB6 346 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 DLL3Q9NYJ7 618 aa17.08■□□□□ 0.33
VPS53-201ENST00000291074 SMPD2O60906 423 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 FAM185AQ8N0U4 392 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 UBAC2Q8NBM4 344 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 LILRB1Q8NHL6 650 aaPredicted RBP17.08■□□□□ 0.32
VPS53-201ENST00000291074 PLK3Q9H4B4 646 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 UQCC1Q9NVA1 299 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 ZNF175Q9Y473 711 aa17.08■□□□□ 0.32
VPS53-201ENST00000291074 SVILO95425 2214 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 SELENOHQ8IZQ5 122 aaKnown RBP17.07■□□□□ 0.32
VPS53-201ENST00000291074 TRIB1Q96RU8 372 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 POMT1Q9Y6A1 747 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 KIAA2026Q5HYC2 2103 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 FTH1P19P0C7X4 201 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 SELEP16581 610 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 IL13RA2Q14627 380 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 TMEM88Q6PEY1 159 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 PIP4P1Q86T03 277 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 SPACA1Q9HBV2 294 aa17.07■□□□□ 0.32
VPS53-201ENST00000291074 NUDT19A8MXV4 375 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 CDRT15L2A8MXV6 281 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 J3QT63 122 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 SLC33A1O00400 549 aaPredicted RBP17.06■□□□□ 0.32
VPS53-201ENST00000291074 NXPH3O95157 252 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 P2RY1P47900 373 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 CAV2P51636 162 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 PPP1CBP62140 327 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 POLR2GP62487 172 aaKnown RBP eCLIP17.06■□□□□ 0.32
VPS53-201ENST00000291074 BTNL8Q6UX41 500 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 TMEM56Q96MV1 263 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 PKIBQ9C010 78 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 MAGT1Q9H0U3 335 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 SH3BGRL3Q9H299 93 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 CLCF1Q9UBD9 225 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 TMEM56-RWDD3S4R434 201 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 BOD1L1Q8NFC6 3051 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 ADAM20O43506 726 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 OR8U9P0C7N5 309 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 UBE2NP61088 152 aaKnown RBP17.06■□□□□ 0.32
VPS53-201ENST00000291074 RND3P61587 244 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 SVBPQ8N300 66 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 OR8U1Q8NH10 309 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 UBALD1Q8TB05 177 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 IL1F10Q8WWZ1 152 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 KIRREL1Q96J84 757 aa17.06■□□□□ 0.32
VPS53-201ENST00000291074 SIRPB1O00241 398 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 LINC00596Q86U02 117 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 NRIP2Q9BQI9 281 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 CDH20Q9HBT6 801 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 FAM24AA6NFZ4 105 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 DEGS1O15121 323 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 SRPXP78539 464 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 CXorf66Q5JRM2 361 aaPredicted RBP17.05■□□□□ 0.32
VPS53-201ENST00000291074 GPR157Q5UAW9 335 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 Q6P435 159 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 CNEP1R1Q8N9A8 125 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 SCCPDHQ8NBX0 429 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 SLC25A40Q8TBP6 338 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 ARV1Q9H2C2 271 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 OR1A1Q9P1Q5 309 aa17.05■□□□□ 0.32
VPS53-201ENST00000291074 CDS2O95674 445 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 FHITP49789 147 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 HLA-DRB3P79483 266 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 C10orf91Q5T1B1 145 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 PRR18Q8N4B5 295 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 HSD17B11Q8NBQ5 300 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 BOD1Q96IK1 185 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 RTL8AQ9BWD3 113 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 PARP11Q9NR21 331 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 CARHSP1Q9Y2V2 147 aaKnown RBP17.04■□□□□ 0.32
VPS53-201ENST00000291074 C9JQL5 133 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 C1QL1O75973 258 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 NKX2-1P43699 371 aaPredicted RBP17.04■□□□□ 0.32
VPS53-201ENST00000291074 EWSR1Q01844 656 aaKnown RBP eCLIP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms