RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SLC35E4Q6ICL7 350 aa11.82□□□□□ -0.52
SS18-201ENST00000269137 PEG10Q86TG7 708 aaKnown RBP11.82□□□□□ -0.52
SS18-201ENST00000269137 TCTE3Q8IZS6 198 aa11.82□□□□□ -0.52
SS18-201ENST00000269137 OR5T2Q8NGG2 359 aa11.82□□□□□ -0.52
SS18-201ENST00000269137 ANGPTL6Q8NI99 470 aa11.82□□□□□ -0.52
SS18-201ENST00000269137 FYTTD1Q96QD9 318 aaKnown RBP11.82□□□□□ -0.52
SS18-201ENST00000269137 SHARPINQ9H0F6 387 aa11.82□□□□□ -0.52
SS18-201ENST00000269137 MBNL3Q9NUK0 354 aaKnown RBP11.82□□□□□ -0.52
SS18-201ENST00000269137 CYB5R3P00387 301 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 FPR2P25090 351 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 RBMXP38159 391 aaKnown RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 PPOXP50336 477 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 NPY4RP50391 375 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 ATXN7L3Q14CW9 347 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 CD276Q5ZPR3 534 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 FAHD2BQ6P2I3 314 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 SLC25A42Q86VD7 318 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 C1orf87Q8N0U7 546 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 MARCH1Q8TCQ1 289 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 FAHD2AQ96GK7 314 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 SNX22Q96L94 193 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 ZNF2Q9BSG1 426 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 MED28Q9H204 178 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 METRNQ9UJH8 293 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 GPR132Q9UNW8 380 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 DSCAMO60469 2012 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 IGHV3OR15-7A0A075B7D8 119 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 OR5H14A6NHG9 310 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 SCTP09683 121 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 RCC1P18754 421 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 CD80P33681 288 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 FAM201AQ5SY85 155 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 ZNF626Q68DY1 528 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 STUMQ69YW2 141 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 TMED4Q7Z7H5 227 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 NOXA1Q86UR1 476 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 OR4A4PQ8NGN8 299 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 PPP1R35Q8TAP8 253 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 DACT3Q96B18 629 aaPredicted RBP11.81□□□□□ -0.52
SS18-201ENST00000269137 SDSLQ96GA7 329 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 SEC22CQ9BRL7 303 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 LIME1Q9H400 295 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 ITGB1BP2Q9UKP3 347 aa11.81□□□□□ -0.52
SS18-201ENST00000269137 OOEPA6NGQ2 149 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 TMEM178BH3BS89 294 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 CREBL2O60519 120 aaPredicted RBP11.8□□□□□ -0.52
SS18-201ENST00000269137 DIRAS3O95661 229 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 TK1P04183 234 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 OR4E1P0C645 316 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 GLP1RP43220 463 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 GABRA2P47869 451 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 UBE2MP61081 183 aaKnown RBP11.8□□□□□ -0.52
SS18-201ENST00000269137 HLA-DRB3P79483 266 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 IGSF11Q5DX21 431 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 KIAA2026Q5HYC2 2103 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 TGIF2LYQ8IUE0 185 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 ASCC1Q8N9N2 400 aaKnown RBP11.8□□□□□ -0.52
SS18-201ENST00000269137 TMEM185AQ8NFB2 350 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 COQ2Q96H96 371 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 CBLN4Q9NTU7 201 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 TRAPPC2LQ9UL33 140 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 PCDHB10Q9UN67 800 aa11.8□□□□□ -0.52
SS18-201ENST00000269137 HRNRQ86YZ3 2850 aaPredicted RBP11.8□□□□□ -0.52
SS18-201ENST00000269137 TANC2Q9HCD6 1990 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 KMT2BQ9UMN6 2715 aaPredicted RBP11.79□□□□□ -0.52
SS18-201ENST00000269137 K7N7A8 449 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 LGALS8O00214 317 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 TFF1P04155 84 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 FCGR2CP31995 323 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 TAS2R31P59538 309 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 HERPUD1Q15011 391 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 C4orf46Q504U0 113 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 ZNF561Q8N587 486 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 CABLES2Q9BTV7 478 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 C5orf66Q9H5L9 145 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 TMEM106BQ9NUM4 274 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 DCAF16Q9NXF7 216 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 IGKV1-6A0A0C4DH72 117 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 MGST3O14880 152 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 RGS13O14921 159 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 SSNA1O43805 119 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 GOSR1O95249 250 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 UCP3P55916 312 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 AESQ08117 197 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 FCN2Q15485 313 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 HMGN3Q15651 99 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 C11orf71Q6IPW1 123 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 DTX2Q86UW9 622 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 ZNF431Q8TF32 576 aaPredicted RBP11.79□□□□□ -0.52
SS18-201ENST00000269137 MOB3AQ96BX8 217 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 RTBDNQ9BSG5 229 aaPredicted RBP11.79□□□□□ -0.52
SS18-201ENST00000269137 NCOR1P1Q9H4R4 102 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 ING3Q9NXR8 418 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 KIF25Q9UIL4 384 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 MAB21L2Q9Y586 359 aa11.79□□□□□ -0.52
SS18-201ENST00000269137 KLF2Q9Y5W3 355 aaPredicted RBP11.79□□□□□ -0.52
SS18-201ENST00000269137 UBR5O95071 2799 aaPredicted RBP11.78□□□□□ -0.52
SS18-201ENST00000269137 FAM208BQ5VWN6 2430 aa11.78□□□□□ -0.52
SS18-201ENST00000269137 TRBV6-7A0A0A0MS04 114 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms