RNA–Protein interactions for RNA: ENST00000249014.4

CDC42EP1-201, Transcript of CDC42 effector protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CDC42EP1, Length 2,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP1-201ENST00000249014 SPAG16Q8N0X2 631 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 SUMF1Q8NBK3 374 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 GINS3Q9BRX5 216 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 PLK3Q9H4B4 646 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 TMEM9BQ9NQ34 198 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 ASCL1P50553 236 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 IL24Q13007 206 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 FAM58AQ8N1B3 248 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 SH3BGRL3Q9H299 93 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 OR51I2Q9H344 312 aa16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 FAM212BQ9NTI7 297 aaPredicted RBP16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 URB1O60287 2271 aaKnown RBP16.65■□□□□ 0.26
CDC42EP1-201ENST00000249014 BORCS7-ASMTA0A0B4J1R7 106 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 CELA3BP08861 270 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SFTA3P0C7M3 94 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SEC11BP0C7V7 166 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SPP1P10451 314 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 CD80P33681 288 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 PMP22Q01453 160 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SWI5Q1ZZU3 235 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 FAM122CQ6P4D5 195 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 LINC00596Q86U02 117 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 BOD1Q96IK1 185 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZDHHC11Q9H8X9 412 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 FAM157AC9JC47 383 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SLC34A2O95436 690 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF806P0C7X5 589 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 DANCRP0C864 163 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 FHITP49789 147 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 POLR2GP62487 172 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 GNMTQ14749 295 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 GTF3AQ92664 365 aaKnown RBP16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 SPACA1Q9HBV2 294 aa16.64■□□□□ 0.25
CDC42EP1-201ENST00000249014 A0A1W2PR80 420 aa16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 TNFSF12O43508 249 aa16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 SNAPINO95295 136 aa16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 CTXN2P0C2S0 81 aa16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 EWSR1Q01844 656 aaKnown RBP eCLIP16.63■□□□□ 0.252e-6■■□□□ 12.3
CDC42EP1-201ENST00000249014 NANOS1Q8WY41 292 aaKnown RBP16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 DLL3Q9NYJ7 618 aa16.63■□□□□ 0.25
CDC42EP1-201ENST00000249014 FAM24AA6NFZ4 105 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 ADAM20O43506 726 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 H2AFB1P0C5Y9 115 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 NKX2-1P43699 371 aaPredicted RBP16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 CXorf66Q5JRM2 361 aaPredicted RBP16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 DHRS7BQ6IAN0 325 aaPredicted RBP16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 WDR86Q86TI4 376 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 OR2C3Q8N628 320 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 HSD17B11Q8NBQ5 300 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 PKIBQ9C010 78 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 RIMS4Q9H426 269 aaPredicted RBP16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 TRBV6-6A0A0A6YYG2 114 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 C1QL1O75973 258 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF14P17017 642 aaPredicted RBP16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 UCP1P25874 307 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 MIDNQ504T8 468 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 NMSQ5H8A3 153 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF880Q6PDB4 577 aa16.62■□□□□ 0.25
CDC42EP1-201ENST00000249014 PRRC2CQ9Y520 2896 aaKnown RBP16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 DVL1P1P54792 670 aaPredicted RBP16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF324BQ6AW86 544 aaPredicted RBP16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 TMEM178AQ8NBL3 297 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 MAGT1Q9H0U3 335 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 IGSF23A1L1A6 192 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 PGLYRP1O75594 196 aaPredicted RBP16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 NFYBP25208 207 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 ERVS71-1P61550 626 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF616Q08AN1 781 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 TRIP6Q15654 476 aaKnown RBP16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 TBC1D28Q2M2D7 210 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 Q6P435 159 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 KIRREL1Q96J84 757 aa16.61■□□□□ 0.25
CDC42EP1-201ENST00000249014 J3QT63 122 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SSSCA1O60232 199 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF44P15621 663 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 TNFSF10P50591 281 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 HLA-DRB3P79483 266 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SRSF6Q13247 344 aaKnown RBP16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 HFEQ30201 348 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 CMTM1Q8IZ96 169 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SPIN2AQ99865 258 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SPIN2BQ9BPZ2 258 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 OR2J1Q9GZK6 312 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 CACFD1Q9UGQ2 172 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 ASPMQ8IZT6 3477 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 CLEC18AA5D8T8 446 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SMPD2O60906 423 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 TSPAN15O95858 294 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 VDAC1P21796 283 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 IGHV1-2P23083 117 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SNCAP37840 140 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 H1FOOQ8IZA3 346 aaPredicted RBP16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 GCNT2Q8N0V5 402 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 CLEC18CQ8NCF0 446 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 PLPPR1Q8TBJ4 325 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 GMPPAQ96IJ6 420 aaPredicted RBP16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 SCRT1Q9BWW7 348 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 IFT22Q9H7X7 185 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 OR2W1Q9Y3N9 320 aa16.6■□□□□ 0.25
CDC42EP1-201ENST00000249014 ZNF175Q9Y473 711 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms