RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IGKV1-39P01597 117 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 IGKV1D-39P04432 117 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 FAM209BQ5JX69 171 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 TUSC5Q8IXB3 177 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 OR2C3Q8N628 320 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 OR2G3Q8NGZ4 309 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 Q8WTZ3 238 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 RGCCQ9H4X1 137 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 NSG2Q9Y328 171 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 CHST1O43916 411 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 SURF2Q15527 256 aaPredicted RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 CLEC12BQ2HXU8 276 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 PCSK4Q6UW60 755 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 IFT22Q9H7X7 185 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 GPR35Q9HC97 309 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 FAM166BA8MTA8 275 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 TCN2P20062 427 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 CEBPDP49716 269 aaPredicted RBP9.13□□□□□ -0.95
USP28-201ENST00000003302 ERVS71-1P61550 626 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 RAB35Q15286 201 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 ALKBH6Q3KRA9 238 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 C4orf17Q53FE4 359 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 C9orf152Q5JTZ5 239 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 PPP1R32Q7Z5V6 425 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 PQLC2LA1A4F0 135 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 TP53I11O14683 189 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 PDCD6O75340 191 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 IGLV2-14P01704 120 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 PET100P0DJ07 73 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 UCP2P55851 309 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 MLF1P58340 268 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 LYSMD4Q5XG99 296 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 CARFQ8N187 725 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 IL1F10Q8WWZ1 152 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 RAB39BQ96DA2 213 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 FAM212BQ9NTI7 297 aaPredicted RBP9.13□□□□□ -0.95
USP28-201ENST00000003302 UBE2CO00762 179 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 ST8SIA3O43173 380 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 ZNF14P17017 642 aaPredicted RBP9.13□□□□□ -0.95
USP28-201ENST00000003302 BMP5P22003 454 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 RAC3P60763 192 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 FOXO1Q12778 655 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 PYY3Q5JQD4 70 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 FAM180AQ6UWF9 173 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 SELENOHQ8IZQ5 122 aaKnown RBP9.13□□□□□ -0.95
USP28-201ENST00000003302 KCNIP3Q9Y2W7 256 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 NBASA2RRP1 2371 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 TNRC6BQ9UPQ9 1833 aaKnown RBP9.13□□□□□ -0.95
USP28-201ENST00000003302 WRBO00258 174 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 LY86O95711 162 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 ZNF726P1Q15940 193 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 MPV17LQ2QL34 196 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 BEND4Q6ZU67 534 aa9.13□□□□□ -0.95
USP28-201ENST00000003302 ZNF292O60281 2723 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 FABP1P07148 127 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 MMP9P14780 707 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 SMCO1Q147U7 214 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ASCL4Q6XD76 172 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 HAPLN4Q86UW8 402 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 TMPRSS5Q9H3S3 457 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 PILRBQ9UKJ0 227 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ARPC4-TTLL3A0A0A6YYG9 625 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 CELA3BP08861 270 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 IAPPP10997 89 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ARF1P84077 181 aaKnown RBP9.12□□□□□ -0.95
USP28-201ENST00000003302 TMEM222Q9H0R3 208 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ZNF665Q9H7R5 613 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 H3BQ15 152 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 TAAR5O14804 337 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 GPR137BO60478 399 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 PSG2P11465 335 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 PPA1Q15181 289 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 OR8B8Q15620 311 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 KRTAP27-1Q3LI81 207 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ATP1A1-AS1Q5TC04 95 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 SP5Q6BEB4 398 aaPredicted RBP9.12□□□□□ -0.95
USP28-201ENST00000003302 ZDHHC23Q8IYP9 409 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 OR2Y1Q8NGV0 311 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 SPSB1Q96BD6 273 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 ZNF700Q9H0M5 742 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 RNF115Q9Y4L5 304 aa9.12□□□□□ -0.95
USP28-201ENST00000003302 SEC11BP0C7V7 166 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 FGF5P12034 268 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 GDF1P27539 372 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 ICAM4Q14773 271 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 HIKESHIQ53FT3 197 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 NMSQ5H8A3 153 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 OR2B11Q5JQS5 317 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 ZNF565Q8N9K5 539 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 HLA-CQ95604 372 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 SCGB3A2Q96PL1 93 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 SEBOXQ9HB31 216 aaPredicted RBP9.11□□□□□ -0.95
USP28-201ENST00000003302 MEMO1Q9Y316 297 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 SIT1Q9Y3P8 196 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 PRSS44E7EML9 344 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 CBR3O75828 277 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 PRDX4Q13162 271 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 PLPPR2Q96GM1 343 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 PLXNB1O43157 2135 aa9.11□□□□□ -0.95
USP28-201ENST00000003302 ZNF732B4DXR9 585 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms