RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 C17orf51A8MQB3 221 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 H7C2G1 150 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CHRM2P08172 466 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ADRA2CP18825 462 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZFAND4Q86XD8 727 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF761Q86XN6 746 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NRMQ8IXM6 262 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TRAF4Q9BUZ4 470 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 C12orf49Q9H741 205 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CHODLQ9H9P2 273 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 BCL2L10Q9HD36 194 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CLEC5AQ9NY25 188 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZFP30Q9Y2G7 519 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KIDINS220Q9ULH0 1771 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TJP1Q07157 1748 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ITPR2Q14571 2701 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR2A25A4D2G3 310 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 M0QYG6 137 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 COX7A2P2O60397 106 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TBXA2RP21731 343 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SEC61GP60059 68 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 RPS4XP62701 263 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 HTR3DQ70Z44 454 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MRGPRGQ86SM5 289 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR2L13Q8N349 312 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 POC1AQ8NBT0 407 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FAM57AQ8TBR7 257 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ST6GAL2Q96JF0 529 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NEURL2Q9BR09 285 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SFXN3Q9BWM7 321 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS22Q9GZN4 317 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR51M1Q9H341 326 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MGAMO43451 1857 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TOPAZ1Q8N9V7 1692 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FEZF1A0PJY2 475 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CLEC18AA5D8T8 446 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CCL22O00626 93 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MT-ND6P03923 174 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CEACAM5P06731 702 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CALCBP10092 127 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FAM53BQ14153 422 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM30BQ3MIR4 351 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 EMC4Q5J8M3 183 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 STPG1Q5TH74 334 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KIR2DL5BQ8NHK3 375 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35B2Q8TB61 432 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 RLN3Q8WXF3 142 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ADAT3Q96EY9 351 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PELI1Q96FA3 418 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MS4A3Q96HJ5 214 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 EGLN2Q96KS0 407 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF385DQ9H6B1 395 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NOX4Q9NPH5 578 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ACER3Q9NUN7 267 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 XRN1Q8IZH2 1706 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A0A087WV62 115 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C11orf97A0A1B0GVM6 126 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DUXBA0A1W2PPF3 345 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 YDJCA8MPS7 323 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A8MWL6 223 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TMPRSS2O15393 492 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TNFSF13O75888 250 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TCRBP04435 133 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PNLIPP16233 465 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FCGR2CP31995 323 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PRDX2P32119 198 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CTBSQ01459 385 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RAB40BQ12829 278 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LEXMQ3ZCV2 418 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MARCH8Q5T0T0 291 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 AGBL4Q5VU57 503 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZFAND6Q6FIF0 208 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TIFABQ6ZNK6 161 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM136Q6ZRR5 245 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LURAP1LQ8IV03 231 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LAX1Q8IWV1 398 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SLC38A9Q8NBW4 561 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RPS4Y2Q8TD47 263 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CCL17Q92583 94 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 INIPQ9NRY2 104 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ANKRD10Q9NXR5 420 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DNAJB12Q9NXW2 375 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NSG2Q9Y328 171 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OARD1Q9Y530 152 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C5P01031 1676 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SLIT3O75094 1523 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 EIF4E2O60573 245 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NEURL1O76050 574 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TRGC1P0CF51 173 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PSMB6P28072 239 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR10J1P30954 320 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LSM11P83369 360 aaKnown RBP eCLIP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CTU2Q2VPK5 515 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TRMT12Q53H54 448 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 D2HGDHQ8N465 521 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CYB561D1Q8N8Q1 229 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DEFB124Q8NES8 71 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LINC00615Q96LM1 132 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MFRPQ9BY79 579 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZMAT3Q9HA38 289 aaKnown RBP2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms