RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TMEM104Q8NE00 496 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 C1orf147Q96MC9 270 aaPredicted RBP14.88□□□□□ -0.03
CLN3-243ENST00000635973 MRPS26Q9BYN8 205 aaKnown RBP14.88□□□□□ -0.03
CLN3-243ENST00000635973 SIRPDQ9H106 197 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 SHISA3A0PJX4 238 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 MEX3AA1L020 520 aaKnown RBP14.87□□□□□ -0.03
CLN3-243ENST00000635973 SMIM30A4D0T7 59 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 MMP9P14780 707 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 P2RX3P56373 397 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 ZNF273Q14593 569 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 KRBOX4Q5JUW0 171 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 HES5Q5TA89 166 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 GPR157Q5UAW9 335 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 TMEM200BQ69YZ2 307 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 OR10K2Q6IF99 312 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 VMO1Q7Z5L0 202 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 KCNG3Q8TAE7 436 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 ZDHHC16Q969W1 377 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 TBX15Q96SF7 602 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 DPCDQ9BVM2 203 aaPredicted RBP14.87□□□□□ -0.03
CLN3-243ENST00000635973 TMEM59Q9BXS4 323 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 KCNK15Q9H427 330 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 SIRT7Q9NRC8 400 aa14.87□□□□□ -0.03
CLN3-243ENST00000635973 TRAV24A0A0B4J272 114 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 hCG_1809904A0A1W2PP81 198 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 A0A1W2PPE2 198 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 A0A1W2PR64 198 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 A0A1W2PRV1 198 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 AIREO43918 545 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 VSIG8P0DPA2 414 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 CCL3L1P16619 93 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 ERP29P30040 261 aaKnown RBP14.86□□□□□ -0.03
CLN3-243ENST00000635973 CLDN12P56749 244 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 MEF2CQ06413 473 aaPredicted RBP14.86□□□□□ -0.03
CLN3-243ENST00000635973 AESQ08117 197 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 METAP1DQ6UB28 335 aaPredicted RBP14.86□□□□□ -0.03
CLN3-243ENST00000635973 SUMF2Q8NBJ7 301 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 LHX4Q969G2 390 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 YIPF6Q96EC8 236 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 Q96M66 194 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 ZNF48Q96MX3 618 aaPredicted RBP14.86□□□□□ -0.03
CLN3-243ENST00000635973 IFT22Q9H7X7 185 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 METTL8Q9H825 291 aaKnown RBP14.86□□□□□ -0.03
CLN3-243ENST00000635973 SPACA1Q9HBV2 294 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 ZNF581Q9P0T4 197 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 STEAP1Q9UHE8 339 aa14.86□□□□□ -0.03
CLN3-243ENST00000635973 TRGV10A0A0A0MS01 117 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 CSN2P05814 226 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 RNASE1P07998 156 aaKnown RBP14.85□□□□□ -0.03
CLN3-243ENST00000635973 CD37P11049 281 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 KCNJ3P48549 501 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 SHISA2Q6UWI4 295 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 C9orf139Q6ZV77 190 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 TPRA1Q86W33 373 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 PDZD9Q8IXQ8 264 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 FAM3DQ96BQ1 224 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 ZNF714Q96N38 554 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 CENPOQ9BU64 300 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 ZNF747Q9BV97 191 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 BARHL1Q9BZE3 327 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 LINC00312Q9Y6C7 94 aa14.85□□□□□ -0.03
CLN3-243ENST00000635973 ODAMA1E959 279 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A10PA6NDY2 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A18PA6NE21 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A16PA6NEW6 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A20PA6NIJ5 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A8PA6NJQ4 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A7PA6NKC0 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 IFITM5A6NNB3 132 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A22PA8MWA6 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A12PA8MX19 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A5PA8MXJ8 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A23PA8MXZ1 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 H3BUI4 141 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 CLDN34H7C241 214 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 AIPO00170 330 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A15PP0C7V4 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A13PP0C7W8 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A14PP0C7W9 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 FAM90A24PP0C7X0 464 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 ZNF728P0DKX0 622 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 SDC2P34741 201 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 GLIPR1P48060 266 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 RPS27AP62979 156 aaKnown RBP14.84□□□□□ -0.03
CLN3-243ENST00000635973 MXD1Q05195 221 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 SLC9A3R2Q15599 337 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 NKAPLQ5M9Q1 402 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 NCR3LG1Q68D85 454 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 RAB12Q6IQ22 244 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 GDPGP1Q6ZNW5 385 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 OR2W3Q7Z3T1 314 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 OR51D1Q8NGF3 324 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 URM1Q9BTM9 101 aaKnown RBP14.84□□□□□ -0.03
CLN3-243ENST00000635973 RNF167Q9H6Y7 350 aa14.84□□□□□ -0.03
CLN3-243ENST00000635973 MEIKINA0A087WXM9 373 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 NOTOA8MTQ0 251 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 TMEM14DPA8MWL7 114 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 MCRIP1C9JLW8 97 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 GLP1RP43220 463 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 DLX1P56177 255 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms