RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MBD3L5A6NJ08 208 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 LRRC30A6NM36 301 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 FCGR3AP08637 254 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 OPCMLQ14982 345 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 RPUSD3Q6P087 351 aaKnown RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 C5orf24Q7Z6I8 188 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 MBD3L2Q8NHZ7 208 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 HAND1O96004 215 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 H2BFSP57053 126 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 Q8IYB0 196 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 FN3KRPQ9HA64 309 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 B8ZZF3 427 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 IFNA2P01563 188 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 IL5P05113 134 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 CD3EP07766 207 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 NDUFA5Q16718 116 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 ARL11Q969Q4 196 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 KIF25Q9UIL4 384 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 IFNA7P01567 189 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 OR3A1P47881 315 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 HOXA4Q00056 320 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-213ENST00000620219 TLE1Q04724 770 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 TMEM128Q5BJH2 165 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 HOGA1Q86XE5 327 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 GON7Q9BXV9 100 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 PCDHB10Q9UN67 800 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 A8MXE2 369 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 RP2O75695 350 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 GIPP09681 153 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-213ENST00000620219 DKK4Q9UBT3 224 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 CST4P01036 141 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 SCTP09683 121 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 PPP3CBP16298 524 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 ZNF14P17017 642 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-213ENST00000620219 CHATP28329 748 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 CAV2P51636 162 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 PPP1R1CQ8WVI7 109 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 DMXL2Q8TDJ6 3036 aa13.42□□□□□ -0.26
CPSF1-213ENST00000620219 IGKV1D-8A0A087WSZ0 117 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 GLAP06280 429 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 OR4A8P0C604 315 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 C9orf62Q8N4C0 152 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 HINT2Q9BX68 163 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 OR5H14A6NHG9 310 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 CD40P25942 277 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 TIMP3P35625 211 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 WDR31Q8NA23 367 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 PIK3IP1Q96FE7 263 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 OR2H2O95918 312 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 AADACP22760 399 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 QRFPP83859 136 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 FGL1Q08830 312 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 KRBOX4Q5JUW0 171 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 ZBTB37Q5TC79 503 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 C1orf162Q8NEQ5 155 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-213ENST00000620219 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.41□□□□□ -0.26
CPSF1-213ENST00000620219 MAB21L2Q9Y586 359 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 C9orf170A2RU37 121 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 SPINT2O43291 252 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 PTAFRP25105 342 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 CD80P33681 288 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 BSPH1Q075Z2 132 aa13.41□□□□□ -0.26
CPSF1-213ENST00000620219 LGALSLQ3ZCW2 172 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-213ENST00000620219 NPDC1Q9NQX5 325 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-213ENST00000620219 EPG5Q9HCE0 2579 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 C1orf147Q96MC9 270 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-213ENST00000620219 HS3ST6Q96QI5 342 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 PCSK5Q92824 1860 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 MYO18BQ8IUG5 2567 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 PQLC2LA1A4F0 135 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 CEACAM6P40199 344 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 GNMTQ14749 295 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 MPV17LQ2QL34 196 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 SAP30LQ9HAJ7 183 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 OPN4Q9UHM6 478 aa13.4□□□□□ -0.26
CPSF1-213ENST00000620219 TNFRSF1AP19438 455 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 OMGP23515 440 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 FPR2P25090 351 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 CYCSP99999 105 aaKnown RBP13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TAF9BQ9HBM6 251 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 UBQLN2Q9UHD9 624 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TMA7Q9Y2S6 64 aaKnown RBP13.39□□□□□ -0.27
CPSF1-213ENST00000620219 LAMA5O15230 3695 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 ZSCAN5BA6NJL1 495 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 H7C1Q1 480 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TMPRSS2O15393 492 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TPPPO94811 219 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TMEM268Q5VZI3 342 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 PIGMQ9H3S5 423 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 TMEM30CPA0ZSE6 113 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 S100A1P23297 94 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 ZMYND11Q15326 602 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 OR1S1Q8NH92 325 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 GTF3AQ92664 365 aaKnown RBP13.39□□□□□ -0.27
CPSF1-213ENST00000620219 A0A1B0GW55 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 I3L521 148 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4L2P0CJ85 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4L3P0CJ86 424 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4L4P0CJ87 422 aa13.39□□□□□ -0.27
CPSF1-213ENST00000620219 DUX4L5P0CJ88 424 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms