RNA–Protein interactions for RNA: ENST00000616390.1

CACNA1C-231, Transcript of calcium voltage-gated channel subunit alpha1 C, human

TSL 2 BASIC

Gene CACNA1C, Length 2,833 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-231	ENST00000616390	SLC33A1	O00400	549 aa	Predicted RBP	11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	HNF1A	P20823	631 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	STOML3	Q8TAV4	291 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	TXN2	Q99757	166 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	PRRX2	Q99811	253 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	RPH3AL	Q9UNE2	315 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390	LAMA5	O15230	3695 aa		11.97	□□□□□ -0.49
CACNA1C-231	ENST00000616390		H7C1Q1	480 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	ASCL1	P50553	236 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	EIF3I	Q13347	325 aa	Known RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	SURF2	Q15527	256 aa	Predicted RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	AKIRIN2	Q53H80	203 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	SPIN3	Q5JUX0	258 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	ATP1A1-AS1	Q5TC04	95 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	DHRS13	Q6UX07	377 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390		Q6ZPA2	131 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	AQP10	Q96PS8	301 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	FAM173A	Q9BQD7	235 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	C2orf88	Q9BSF0	95 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	ZNF286A	Q9HBT8	521 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	SLC2A9	Q9NRM0	540 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	TREM2	Q9NZC2	230 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	LHX6	Q9UPM6	363 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	SERTM2	A0A1B0GWG4	89 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	TMEM218	A2RU14	115 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	PHF1	O43189	567 aa	Predicted RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	SYNGR4	O95473	234 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	FAM157C	P0CG43	387 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	LHX2	P50458	406 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	LBH	Q53QV2	105 aa	Predicted RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	RIPPLY2	Q5TAB7	128 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	MRPL21	Q7Z2W9	205 aa	Known RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	ARL11	Q969Q4	196 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	BSCL2	Q96G97	398 aa	Predicted RBP	11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	TTTY12	Q9BZ98	90 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	FBXL17	Q9UF56	701 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	HSF4	Q9ULV5	492 aa		11.96	□□□□□ -0.49
CACNA1C-231	ENST00000616390	MED12L	Q86YW9	2145 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	IGHV3-64D	A0A0J9YX35	117 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	MED19	A0JLT2	244 aa	Predicted RBP	11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DNASE2	O00115	360 aa	Predicted RBP	11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	FGF16	O43320	207 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	PDCD6	O75340	191 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ADCYAP1	P18509	176 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	AADAC	P22760	399 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	RBM11	P57052	281 aa	Known RBP	11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TMEM33	P57088	247 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	PRDX4	Q13162	271 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TMEM164	Q5U3C3	297 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TMEM42	Q69YG0	159 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TGIF2LX	Q8IUE1	241 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CCDC54	Q8NEL0	328 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ZNF488	Q96MN9	340 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DEFB127	Q9H1M4	99 aa		11.96	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CLDN18	P56856	261 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	HERV-K104	P61576	105 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	RAB1A	P62820	205 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	IL15RA	Q13261	267 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DCAF10	Q5QP82	559 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	SUMF1	Q8NBK3	374 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	OR52M1	Q8NGK5	317 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	WFDC12	Q8WWY7	111 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ERGIC1	Q969X5	290 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	NAA60	Q9H7X0	242 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	B4GALT7	Q9UBV7	327 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	STARD10	Q9Y365	291 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ATG12	O94817	140 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	NXPH3	O95157	252 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CRYAB	P02511	175 aa	Known RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	MBP	P02686	304 aa	Predicted RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	MUC1	P15941	1255 aa	Predicted RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	OR8B8	Q15620	311 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	SPATA46	Q5T0L3	261 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DHRS11	Q6UWP2	260 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ZNF100	Q8IYN0	542 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	PUSL1	Q8N0Z8	303 aa	Known RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TMEM251	Q8N6I4	163 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	OR4A4P	Q8NGN8	299 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	SECTM1	Q8WVN6	248 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	TLNRD1	Q9H1K6	362 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	NDRG3	Q9UGV2	375 aa		11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	SPEN	Q96T58	3664 aa	Known RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CNOT1	A5YKK6	2376 aa	Known RBP	11.95	□□□□□ -0.5
CACNA1C-231	ENST00000616390		A0A1B0GV50	99 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	ZNF732	B4DXR9	585 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CA11	O75493	328 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	FUT3	P21217	361 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	GLP1R	P43220	463 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	LPAR6	P43657	344 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	NAAA	Q02083	359 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	NUFIP2	Q7Z417	695 aa	Known RBP	11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	MCEMP1	Q8IX19	187 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	MEGF10	Q96KG7	1140 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	C1QTNF5	Q9BXJ0	243 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	RGCC	Q9H4X1	137 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	CACNA1D	Q01668	2161 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DEDD	O75618	318 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	LYL1	P12980	280 aa		11.94	□□□□□ -0.5
CACNA1C-231	ENST00000616390	DTYMK	P23919	212 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms