RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CSN2P05814 226 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 ACTBL2Q562R1 376 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 TEX36Q5VZQ5 186 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 STUMQ69YW2 141 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 ZNF497Q6ZNH5 498 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 OVCH2Q7RTZ1 564 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 CADM3Q8N126 398 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 OR13C8Q8NGS7 320 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 C20orf85Q9H1P6 137 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 DNAJB11Q9UBS4 358 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 FLVCR2Q9UPI3 526 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 FUOMA2VDF0 154 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 INMT-MINDY4F8WBC2 141 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 TMEM178BH3BS89 294 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 ZNF205O95201 554 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 MDH2P40926 338 aaKnown RBP11.94□□□□□ -0.5
USP39-220ENST00000613444 OR3A1P47881 315 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 TAS2R46P59540 309 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 OR5H2Q8NGV7 314 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 HPS1Q92902 700 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 SPOCK3Q9BQ16 436 aa11.94□□□□□ -0.5
USP39-220ENST00000613444 RIMS4Q9H426 269 aaPredicted RBP11.94□□□□□ -0.5
USP39-220ENST00000613444 CRYBG3Q68DQ2 2970 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 AKAP6Q13023 2319 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 CLEC18AA5D8T8 446 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 BTG1P62324 171 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 ATXN7L3Q14CW9 347 aaPredicted RBP11.93□□□□□ -0.5
USP39-220ENST00000613444 RBMS2Q15434 407 aaKnown RBP11.93□□□□□ -0.5
USP39-220ENST00000613444 AGAP6Q5VW22 663 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 RSBN1Q5VWQ0 802 aaPredicted RBP11.93□□□□□ -0.5
USP39-220ENST00000613444 CLEC18BQ6UXF7 455 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 IDO2Q6ZQW0 420 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 C5orf24Q7Z6I8 188 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 CLEC18CQ8NCF0 446 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 TRAF4Q9BUZ4 470 aaPredicted RBP11.93□□□□□ -0.5
USP39-220ENST00000613444 TMEM106BQ9NUM4 274 aa11.93□□□□□ -0.5
USP39-220ENST00000613444 DISC1C4P0D8 188 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 SDCBPO00560 298 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 IRF2P14316 349 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 BCAP31P51572 246 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 RAG2P55895 527 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 RAB25P57735 213 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 PAX5Q02548 391 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 CHRFAM7AQ494W8 412 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 ZNF660Q6AZW8 331 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 ARRDC1Q8N5I2 433 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 COQ2Q96H96 371 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 PRRT1Q99946 306 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 VRK1Q99986 396 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 GINS4Q9BRT9 223 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 ZNF286AQ9HBT8 521 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 CHMP1AQ9HD42 196 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 MAB21L2Q9Y586 359 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 USF3Q68DE3 2245 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 IGHV1-69-2A0A0G2JMI3 117 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 OOEPA6NGQ2 149 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 LRRC30A6NM36 301 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 GOSR1O95249 250 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 H2AFB2P0C5Z0 115 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 GSTT2P0CG29 244 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 MUC1P15941 1255 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 RCC1P18754 421 aaPredicted RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 MECP2P51608 486 aaKnown RBP11.92□□□□□ -0.5
USP39-220ENST00000613444 CDK10Q15131 360 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 ZMYND11Q15326 602 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 TATDN3Q17R31 274 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 LHFPL1Q86WI0 220 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 CCL17Q92583 94 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 SDSLQ96GA7 329 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 LIME1Q9H400 295 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 EHFQ9NZC4 300 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 SCP2D1Q9UJQ7 156 aa11.92□□□□□ -0.5
USP39-220ENST00000613444 POM121CA8CG34 1229 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 OR3A3P47888 321 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 SCGB2B2Q4G0G5 96 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 MBNL3Q9NUK0 354 aaKnown RBP11.91□□□□□ -0.5
USP39-220ENST00000613444 FBXO9Q9UK97 447 aaPredicted RBP11.91□□□□□ -0.5
USP39-220ENST00000613444 A0A1B0GW55 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 LGALS8O00214 317 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 TNFRSF13BO14836 293 aaPredicted RBP11.91□□□□□ -0.5
USP39-220ENST00000613444 ARPC1BO15143 372 aaKnown RBP11.91□□□□□ -0.5
USP39-220ENST00000613444 CLDN1O95832 211 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 IFNA6P05013 189 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 SCTP09683 121 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L2P0CJ85 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L3P0CJ86 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L4P0CJ87 422 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L5P0CJ88 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L6P0CJ89 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L7P0CJ90 424 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 GABRA2P47869 451 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 KCNJ3P48549 501 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 ARPC4P59998 168 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 AESQ08117 197 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 HERPUD1Q15011 391 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 GRK1Q15835 563 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 AADACL3Q5VUY0 350 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 SLC35E4Q6ICL7 350 aa11.91□□□□□ -0.5
USP39-220ENST00000613444 DUX4L9Q6RFH8 374 aaPredicted RBP11.91□□□□□ -0.5
USP39-220ENST00000613444 ZNF788Q6ZQV5 615 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms