RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SCCPDHQ8NBX0 429 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 RAB39BQ96DA2 213 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 OCSTAMPQ9BR26 566 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 REG4Q9BYZ8 158 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 TLNRD1Q9H1K6 362 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 RHOFQ9HBH0 211 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 PCDHB10Q9UN67 800 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 WIPI2Q9Y4P8 454 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 PPIAL4AQ9Y536 164 aa8.46□□□□□ -1.06
UPF1-213ENST00000601981 FLNAP21333 2647 aaKnown RBP8.46□□□□□ -1.06
UPF1-213ENST00000601981 MED13LQ71F56 2210 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 TRAV6A0A075B6T7 132 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 TRAV38-1A0A0B4J264 116 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 DISC1C4P0D8 188 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 RNF223E7ERA6 249 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 TRAPPC2LH3BP13 241 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 H3BUI4 141 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 H7C1Q1 480 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 PRAF2O60831 178 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 PEX14O75381 377 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 FSTL3O95633 263 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 CYB5R3P00387 301 aaPredicted RBP8.45□□□□□ -1.06
UPF1-213ENST00000601981 SFTPBP07988 381 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 CD99P14209 185 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 GABRR1P24046 479 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 CHATP28329 748 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 CFHR2P36980 270 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 MECP2P51608 486 aaKnown RBP8.45□□□□□ -1.06
UPF1-213ENST00000601981 FGF12P61328 243 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 LOXL1Q08397 574 aaPredicted RBP8.45□□□□□ -1.06
UPF1-213ENST00000601981 ARFRP1Q13795 201 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 TMEM155Q4W5P6 130 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 SPRNQ5BIV9 151 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 AVPI1Q5T686 147 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 SIGIRRQ6IA17 410 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 FAAP20Q6NZ36 180 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 WDR82Q6UXN9 313 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 LINC00596Q86U02 117 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 RTN4RL2Q86UN3 420 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 Q8IYB0 196 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 BOLLQ8N9W6 283 aaKnown RBP8.45□□□□□ -1.06
UPF1-213ENST00000601981 OR4D10Q8NGI6 311 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 LRRC29Q8WV35 223 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 SLAMF9Q96A28 289 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 OR51I2Q9H344 312 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 SLC2A8Q9NY64 477 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 DNAJB11Q9UBS4 358 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 ST3GAL6Q9Y274 331 aa8.45□□□□□ -1.06
UPF1-213ENST00000601981 OOEPA6NGQ2 149 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 SRRM5B3KS81 715 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 BOLA2-SMG1P6H3BVE0 249 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 LGALS8O00214 317 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 GEMIN2O14893 280 aaKnown RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 NDUFA2O43678 99 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 PDCD6O75340 191 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 IGHV2-70P01814 119 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 AMY2AP04746 511 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 ZNF735P0CB33 412 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 FOSL1P15407 271 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 MUC1P15941 1255 aaPredicted RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 BCL3P20749 454 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 GLRA1P23415 457 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 NPBWR2P48146 333 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 IL13RA2Q14627 380 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 TAF9Q16594 264 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 MICBQ29980 383 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 MPV17LQ2QL34 196 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 SMIM21Q3B7S5 101 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 PIGYQ3MUY2 71 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 RNASE10Q5GAN6 216 aaKnown RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 NKAPLQ5M9Q1 402 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 FIP1L1Q6UN15 594 aaKnown RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 ZNF826PQ6ZT77 177 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 NLRC3Q7RTR2 1065 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 C6orf201Q7Z4U5 140 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 WDR86Q86TI4 376 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 HOGA1Q86XE5 327 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 GVQW1Q8N7I0 195 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 OR51S1Q8NGJ8 323 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 SNAPC3Q92966 411 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 EMG1Q92979 244 aaKnown RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 C18orf12Q96KH6 178 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 PRRT1Q99946 306 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 TINAGL1Q9GZM7 467 aaPredicted RBP8.44□□□□□ -1.06
UPF1-213ENST00000601981 CHST6Q9GZX3 395 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 GHITMQ9H3K2 345 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 PLEKHJ1Q9NW61 149 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 RASL12Q9NYN1 266 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 MTCH1Q9NZJ7 389 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 SCP2D1Q9UJQ7 156 aa8.44□□□□□ -1.06
UPF1-213ENST00000601981 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.43□□□□□ -1.064e-10■■■■■ 28.9
UPF1-213ENST00000601981 SETD2Q9BYW2 2564 aaPredicted RBP8.43□□□□□ -1.06
UPF1-213ENST00000601981 VPS13CQ709C8 3753 aa8.43□□□□□ -1.06
UPF1-213ENST00000601981 A0A0A6YYJ9 748 aa8.43□□□□□ -1.06
UPF1-213ENST00000601981 NKX6-3A6NJ46 265 aa8.43□□□□□ -1.06
UPF1-213ENST00000601981 M0QYG6 137 aa8.43□□□□□ -1.06
UPF1-213ENST00000601981 SMAD7O15105 426 aaKnown RBP8.43□□□□□ -1.06
UPF1-213ENST00000601981 ARPC1BO15143 372 aaKnown RBP8.43□□□□□ -1.06
UPF1-213ENST00000601981 SYNGR1O43759 233 aa8.43□□□□□ -1.06
UPF1-213ENST00000601981 CCNKO75909 580 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms