RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ATXN7L3Q14CW9 347 aaPredicted RBP11.49□□□□□ -0.57
LIG1-218ENST00000599322 SPHARQ15513 63 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 MED22Q15528 200 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 SSX2Q16385 188 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 RNLSQ5VYX0 342 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 ASPHD2Q6ICH7 369 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 Q6P435 159 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 BRICD5Q6PL45 260 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 HEPN1Q6WQI6 88 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 ASCL4Q6XD76 172 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 RNF144BQ7Z419 303 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 ABHD12Q8N2K0 398 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 NKAIN3Q8N8D7 197 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 OR13C5Q8NGS8 318 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 MRPS24Q96EL2 167 aaKnown RBP11.49□□□□□ -0.57
LIG1-218ENST00000599322 OR14A2Q96R54 314 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 NPFFR1Q9GZQ6 430 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 CCDC90BQ9GZT6 254 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 SPACA1Q9HBV2 294 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 RAB9BQ9NP90 201 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 BLOC1S6Q9UL45 172 aa11.49□□□□□ -0.57
LIG1-218ENST00000599322 MRPS28Q9Y2Q9 187 aaKnown RBP11.49□□□□□ -0.57
LIG1-218ENST00000599322 IGHV2-26A0A0B4J1V2 119 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 A0A1W2PPK0 400 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 F2RL2O00254 374 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 RGS10O43665 173 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 MAS1P04201 325 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 IGFBP3P17936 291 aaPredicted RBP11.48□□□□□ -0.57
LIG1-218ENST00000599322 GABRA5P31644 462 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 BRS3P32247 399 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 GLP1RP43220 463 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 RANBP1P43487 201 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 RBM39Q14498 530 aaKnown RBP11.48□□□□□ -0.57
LIG1-218ENST00000599322 MPV17LQ2QL34 196 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 SLC22A6Q4U2R8 563 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 ARSJQ5FYB0 599 aaPredicted RBP11.48□□□□□ -0.57
LIG1-218ENST00000599322 ATAD3CQ5T2N8 411 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 AWAT2Q6E213 333 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 C11orf88Q6PI97 169 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 ZNF485Q8NCK3 441 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 Q8NFD4 153 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 OR2T6Q8NHC8 308 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 UFD1Q92890 307 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 PGLYRP3Q96LB9 341 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 CDCA4Q9BXL8 241 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 NCOR1P1Q9H4R4 102 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 FKBP14Q9NWM8 211 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 PKD1L1Q8TDX9 2849 aa11.48□□□□□ -0.57
LIG1-218ENST00000599322 FAM90A8PA6NJQ4 464 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 ODF3BA8MYP8 253 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 LEUTXA8MZ59 168 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 TIMM23O14925 209 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 TSPAN9O75954 239 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 MYF6P23409 242 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 NFYBP25208 207 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 PIGYQ3MUY2 71 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 ACSM3Q53FZ2 586 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 PLA1AQ53H76 456 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 NHLRC3Q5JS37 347 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 PRAMEF5Q5TYX0 476 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 LAIR2Q6ISS4 152 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 Q6ZSV7 163 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 LHFPL4Q7Z7J7 247 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 LINC01006Q8NI28 216 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 TAF15Q92804 592 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIG1-218ENST00000599322 MUL1Q969V5 352 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 DERL3Q96Q80 235 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 NKX3-1Q99801 234 aaPredicted RBP11.47□□□□□ -0.57
LIG1-218ENST00000599322 DPCDQ9BVM2 203 aaPredicted RBP11.47□□□□□ -0.57
LIG1-218ENST00000599322 C16orf95Q9H693 158 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 DPM3Q9P2X0 92 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 GHRLQ9UBU3 117 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 AMMECR1Q9Y4X0 333 aaPredicted RBP11.47□□□□□ -0.57
LIG1-218ENST00000599322 HILPDAQ9Y5L2 63 aa11.47□□□□□ -0.57
LIG1-218ENST00000599322 MEGF8Q7Z7M0 2845 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 TRBV5-7A0A0A0MS05 114 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 KBTBD11-OT1A0A1B0GTJ5 212 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 TMEM30CPA0ZSE6 113 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 VGLL3A8MV65 326 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 MCRIP1C9JLW8 97 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 M0QZ24 198 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 PEX14O75381 377 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 HSMCR30P0CW71 290 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 GZMHP20718 246 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 MNDAP41218 407 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 RBM11P57052 281 aaKnown RBP11.46□□□□□ -0.57
LIG1-218ENST00000599322 RPS11P62280 158 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIG1-218ENST00000599322 RELBQ01201 579 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 GPR50Q13585 617 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 TRAM1Q15629 374 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 GLT8D1Q68CQ7 371 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 CCDC144NLQ6NUI1 221 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 CRIP3Q6Q6R5 217 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 GLIPR1L1Q6UWM5 242 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 IZUMO2Q6UXV1 221 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 SUMF2Q8NBJ7 301 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 C17orf50Q8WW18 174 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 NRG4Q8WWG1 115 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 WFDC12Q8WWY7 111 aa11.46□□□□□ -0.57
LIG1-218ENST00000599322 ORAI1Q96D31 301 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms