RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 F8VWA3 439 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 ZNF780AO75290 641 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 CYB5AP00167 134 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 ARSBP15848 533 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 BCL3P20749 454 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 SOX6P35712 828 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 BPIFB3P59826 476 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 UNC119Q13432 240 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 GPR176Q14439 515 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 OR2W3Q7Z3T1 314 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 OR4S1Q8NGB4 309 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 LRRC29Q8WV35 223 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 ACOT12Q8WYK0 555 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 PTX4Q96A99 478 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 CEP19Q96LK0 163 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 ZNF488Q96MN9 340 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 DCUN1D5Q9BTE7 237 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 RASL12Q9NYN1 266 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 SPATA2Q9UM82 520 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 A3GALT2U3KPV4 340 aa11.37□□□□□ -0.59
SHKBP1-218ENST00000598907 CENPVL3A0A0U1RRI6 287 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 TMEM272A0A1B0GTI8 110 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 A0A1W2PP11 408 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 TMEM178BH3BS89 294 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 AKR7A2O43488 359 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 FSTL3O95633 263 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 PAHP00439 452 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 SNRPBP14678 240 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 PITPNBP48739 271 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 RSU1Q15404 277 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 LDLRAD3Q86YD5 345 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 PDZD9Q8IXQ8 264 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 Q8IYB0 196 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 TMEM104Q8NE00 496 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 OR51T1Q8NGJ9 327 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 OR5H6Q8NGV6 325 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 OR11L1Q8NGX0 322 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 AP3S1Q92572 193 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 MRPS24Q96EL2 167 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 NEIL1Q96FI4 390 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 S100A13Q99584 98 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 KCNK15Q9H427 330 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 TMEM165Q9HC07 324 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 HMG20AQ9NP66 347 aa11.36□□□□□ -0.59
SHKBP1-218ENST00000598907 hCG_1807616A0A1W2PRN6 198 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 WI2-2373I1.2A0A1W2PRP0 233 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 LRRC30A6NM36 301 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 TSPAN9O75954 239 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 CYB5R3P00387 301 aaPredicted RBP11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 IGLL1P15814 213 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 RAB6AP20340 208 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 BMXP51813 675 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 HOXA4Q00056 320 aaPredicted RBP11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 PLA2G7Q13093 441 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 ZNF404Q494X3 552 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 SLC22A6Q4U2R8 563 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 NHLRC3Q5JS37 347 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 TEX36Q5VZQ5 186 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 SLC35E4Q6ICL7 350 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 OR10K2Q6IF99 312 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 ACP7Q6ZNF0 438 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 FAM90A1Q86YD7 464 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 C1orf87Q8N0U7 546 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 FAM58AQ8N1B3 248 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 KLHDC1Q8N7A1 406 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 OR8B3Q8NGG8 313 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 OR10K1Q8NGX5 313 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 KCNG3Q8TAE7 436 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 LGALS14Q8TCE9 139 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 LHX4Q969G2 390 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 CMTM3Q96MX0 182 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 OR8B2Q96RD0 313 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 TBX15Q96SF7 602 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 OCSTAMPQ9BR26 566 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 WDR13Q9H1Z4 485 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 MMP28Q9H239 520 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 DPAGT1Q9H3H5 408 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 SEBOXQ9HB31 216 aaPredicted RBP11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 PCDHB16Q9NRJ7 776 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 RBFOX1Q9NWB1 397 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 VPREB3Q9UKI3 123 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 RAB22AQ9UL26 194 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 ETV7Q9Y603 341 aa11.35□□□□□ -0.59
SHKBP1-218ENST00000598907 IGHV1-69DA0A0B4J2H0 117 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 BTBD17A6NE02 478 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 C22orf46C9J442 243 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 TOX4O94842 621 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 HTR3BO95264 441 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 IGHV1-69P01742 117 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 GTF2F2P13984 249 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 IRF2P14316 349 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 MGMTP16455 207 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 SERPINA2P20848 420 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 GLRA1P23415 457 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 EFNB2P52799 333 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 RPS27AP62979 156 aaKnown RBP11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 ZNF146Q15072 292 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 C1orf122Q6ZSJ8 110 aa11.34□□□□□ -0.59
SHKBP1-218ENST00000598907 NLRC3Q7RTR2 1065 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms