RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 SOX2P48431 317 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 BDH1Q02338 343 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 MRPL28Q13084 256 aaKnown RBP9.97□□□□□ -0.81
TRIM28-212ENST00000597995 CDK5R1Q15078 307 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 RCN1Q15293 331 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 ABCA11PQ4W5N1 156 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 BAIAP2L2Q6UXY1 529 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 SAXO1Q8IYX7 474 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 ABHD12Q8N2K0 398 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF485Q8NCK3 441 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 OR5D14Q8NGL3 314 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 CYGBQ8WWM9 190 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 CREB3L1Q96BA8 519 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 WWC2-AS2Q96NR7 200 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 SLC25A33Q9BSK2 321 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 GLS2Q9UI32 602 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 DHDHQ9UQ10 334 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 DNAH9Q9NYC9 4486 aa9.96□□□□□ -0.81
TRIM28-212ENST00000597995 LEUTXA8MZ59 168 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 M0QZK8 103 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 SH2D1BO14796 132 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 OGG1O15527 345 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 RPSAP08865 295 aaKnown RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 GNAO1P09471 354 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 OCM2P0CE71 109 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 OCMP0CE72 109 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 VSIG8P0DPA2 414 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 GLIPR1P48060 266 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 P2RX3P56373 397 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 CD69Q07108 199 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 DCTN2Q13561 401 aaKnown RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 DOC2BQ14184 412 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 HEPN1Q6WQI6 88 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 PACRGLQ8N7B6 248 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 LINC00482Q8N8I6 264 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 TSEN15Q8WW01 171 aaKnown RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 DPF1Q92782 380 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 GGHQ92820 318 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 CORO2AQ92828 525 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 ORAI1Q96D31 301 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 B9D2Q9BPU9 175 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 GAL3ST2Q9H3Q3 398 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 EXOSC4Q9NPD3 245 aaKnown RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 TAS2R4Q9NYW5 299 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 TAS2R3Q9NYW6 316 aa9.96□□□□□ -0.82
TRIM28-212ENST00000597995 DIMT1Q9UNQ2 313 aaKnown RBP9.96□□□□□ -0.82
TRIM28-212ENST00000597995 TRGV10A0A0A0MS01 117 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 FUOMA2VDF0 154 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 SLC33A1O00400 549 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-212ENST00000597995 GABRPO00591 440 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 IGLV1-47P01700 117 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 AMY1AP04745 511 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 AMY2AP04746 511 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 HCKP08631 526 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 TMEM225BP0DP42 221 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 CD24P25063 80 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 CD34P28906 385 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 GDNFP39905 211 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 CEACAM3P40198 252 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 AESQ08117 197 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 CCDC58Q4VC31 144 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 UTF1Q5T230 341 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 OGFRL1Q5TC84 451 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-212ENST00000597995 TTC23Q5W5X9 447 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 RPL22L1Q6P5R6 122 aaKnown RBP9.95□□□□□ -0.82
TRIM28-212ENST00000597995 TRAPPC6BQ86SZ2 158 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 OSR2Q8N2R0 312 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 DHRSXQ8N5I4 330 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 OR51D1Q8NGF3 324 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 OR13C5Q8NGS8 318 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 COQ2Q96H96 371 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 MCRIP2Q9BUT9 160 aaKnown RBP9.95□□□□□ -0.82
TRIM28-212ENST00000597995 RHOFQ9HBH0 211 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 NEK6Q9HC98 313 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 BABAM2Q9NXR7 383 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 ZNF581Q9P0T4 197 aa9.95□□□□□ -0.82
TRIM28-212ENST00000597995 OOSP1A8MZH6 123 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 CASQ2O14958 399 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 ZNF44P15621 663 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 RAB3AP20336 220 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 HOXD3P31249 432 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 RPS11P62280 158 aaKnown RBP eCLIP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 SCN1BQ07699 218 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 KHDC1LQ5JSQ8 128 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 DMKNQ6E0U4 476 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 ELP2Q6IA86 826 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 C10orf99Q6UWK7 81 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 ASCL4Q6XD76 172 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 MRPL41Q8IXM3 137 aaKnown RBP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 ZFP41Q8N8Y5 198 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 Q8NFD4 153 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 PXT1Q8NFP0 134 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 OR10K1Q8NGX5 313 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 HAVCR2Q8TDQ0 301 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 GPR148Q8TDV2 347 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 FBLIM1Q8WUP2 373 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 SMIM19Q96E16 107 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 TMEM80Q96HE8 168 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 C8orf4Q9NR00 106 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 ZMAT5Q9UDW3 170 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms