RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 C4orf36Q96KX1 117 aa10.86□□□□□ -0.67
TRIM28-211ENST00000597968 SLC29A1Q99808 456 aa10.86□□□□□ -0.67
TRIM28-211ENST00000597968 ZNF286AQ9HBT8 521 aa10.86□□□□□ -0.67
TRIM28-211ENST00000597968 ZMAT5Q9UDW3 170 aaKnown RBP10.86□□□□□ -0.67
TRIM28-211ENST00000597968 MYRFQ9Y2G1 1151 aa10.86□□□□□ -0.67
TRIM28-211ENST00000597968 MAGEB3O15480 346 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 FGF16O43320 207 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 CGB3P0DN86 165 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 CGB7P0DN87 165 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 RAB7AP51149 207 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 ZP1P60852 638 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 RAB40BQ12829 278 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 DCTN2Q13561 401 aaKnown RBP10.85□□□□□ -0.67
TRIM28-211ENST00000597968 CDK5R1Q15078 307 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 C17orf58Q2M2W7 97 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 RNF144BQ7Z419 303 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 OR8H3Q8N146 312 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 COMMD1Q8N668 190 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 OR51D1Q8NGF3 324 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 OR51A4Q8NGJ6 313 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 OR10AC1Q8NH08 325 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 RPEQ96AT9 228 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 LGALS12Q96DT0 336 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 COQ2Q96H96 371 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 KIRREL1Q96J84 757 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 AMBNQ9NP70 447 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 MOB4Q9Y3A3 225 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 HSPE1-MOB4S4R3N1 261 aa10.85□□□□□ -0.67
TRIM28-211ENST00000597968 NPIPB11E5RHQ5 1161 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 IL1AP01583 271 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 AMY1AP04745 511 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 AMY2AP04746 511 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 LPLP06858 475 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 HCKP08631 526 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 TMEM225BP0DP42 221 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 JUNBP17275 347 aaPredicted RBP10.84□□□□□ -0.67
TRIM28-211ENST00000597968 GABRB1P18505 474 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 SNU13P55769 128 aaKnown RBP10.84□□□□□ -0.67
TRIM28-211ENST00000597968 MADCAM1Q13477 382 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 TMEM95Q3KNT9 176 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 TCTEX1D4Q5JR98 221 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 ZNF691Q5VV52 312 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 HIST2H2BDQ6DRA6 164 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 ZNF529Q6P280 563 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 LHFPL3Q86UP9 236 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 OR5AK2Q8NH90 309 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 CHPT1Q8WUD6 406 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 MYDGFQ969H8 173 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 RFT1Q96AA3 541 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 MCRIP2Q9BUT9 160 aaKnown RBP10.84□□□□□ -0.67
TRIM28-211ENST00000597968 ALG8Q9BVK2 526 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 IFT22Q9H7X7 185 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 ZFP57Q9NU63 452 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 MRPS18AQ9NVS2 196 aaKnown RBP10.84□□□□□ -0.67
TRIM28-211ENST00000597968 DHDHQ9UQ10 334 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 GMPPBQ9Y5P6 360 aa10.84□□□□□ -0.67
TRIM28-211ENST00000597968 H0YJX3 145 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 J3QR06 171 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 ZFPL1O95159 310 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 PRB2P02812 416 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-211ENST00000597968 CD2P06729 351 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 IGLL1P15814 213 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 RAB3AP20336 220 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 GBX2P52951 348 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-211ENST00000597968 SCN1BQ07699 218 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 EGFEM1PQ0D2K5 195 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 Q3ZCU0 254 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 CCDC58Q4VC31 144 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 KLHL22Q53GT1 634 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 NHLRC3Q5JS37 347 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 ASCL4Q6XD76 172 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 LINC00596Q86U02 117 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 OR5D18Q8NGL1 313 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 CNIH3Q8TBE1 160 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 DPF1Q92782 380 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 TOMM40LQ969M1 308 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 SPACA5Q96QH8 159 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 JAM3Q9BX67 310 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 ISG20L2Q9H9L3 353 aaKnown RBP10.83□□□□□ -0.68
TRIM28-211ENST00000597968 S100A14Q9HCY8 104 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 PAK1IP1Q9NWT1 392 aaPredicted RBP10.83□□□□□ -0.68
TRIM28-211ENST00000597968 CALYQ9NYX4 217 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 IDI2-AS1Q9NZ38 188 aa10.83□□□□□ -0.68
TRIM28-211ENST00000597968 MEIKINA0A087WXM9 373 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 ZNF780AO75290 641 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-211ENST00000597968 GZMHP20718 246 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 CD24P25063 80 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 GDNFP39905 211 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 ATXN7L3Q14CW9 347 aaPredicted RBP10.82□□□□□ -0.68
TRIM28-211ENST00000597968 PAN3Q58A45 887 aaKnown RBP10.82□□□□□ -0.68
TRIM28-211ENST00000597968 BAIAP2L2Q6UXY1 529 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 C8orf31Q8N9H6 132 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 OR52M1Q8NGK5 317 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 RHOXF1Q8NHV9 184 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 ERVK13-1Q9NX77 482 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 IL36GQ9NZH8 169 aa10.82□□□□□ -0.68
TRIM28-211ENST00000597968 RPL36Q9Y3U8 105 aaKnown RBP10.82□□□□□ -0.68
TRIM28-211ENST00000597968 TRAV24A0A0B4J272 114 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 A0A1W2PRX2 142 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 PSMB11A5LHX3 300 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms