RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TMEM186Q96B77 213 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 RAB3CQ96E17 227 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 ARHGAP5-AS1Q96IT6 56 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 NEDD4LQ96PU5 975 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 OR8B2Q96RD0 313 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 HIF1ANQ9NWT6 349 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 RCC2Q9P258 522 aaKnown RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 METRNQ9UJH8 293 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 H3BUI4 141 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 SIRPB1O00241 398 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 SLC33A1O00400 549 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 TMPRSS2O15393 492 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF44P15621 663 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 GNB3P16520 340 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 LMO1P25800 156 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 GABRA2P47869 451 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 KCNJ8Q15842 424 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 CDNFQ49AH0 187 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 ESCO2Q56NI9 601 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 NKAPLQ5M9Q1 402 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 ATAD3CQ5T2N8 411 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 ATPAF1Q5TC12 328 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 WDR25Q64LD2 544 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 BRICD5Q6PL45 260 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 Q6ZTK2 550 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 C6orf201Q7Z4U5 140 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 MFSD4AQ8N468 514 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 CYYR1Q96J86 154 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 GAFA1Q96PS6 74 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 SSBP3Q9BWW4 388 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 PECRQ9BY49 303 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 SPACA1Q9HBV2 294 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 AKIP1Q9NQ31 210 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 PLEKHJ1Q9NW61 149 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 KAAG1Q9UBP8 84 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 HSF4Q9ULV5 492 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 MRPS7Q9Y2R9 242 aaKnown RBP12.43□□□□□ -0.42
TRIM28-207ENST00000597136 KCNK7Q9Y2U2 307 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 V9GYH0 126 aa12.43□□□□□ -0.42
TRIM28-207ENST00000597136 A0A0G2JMP0 313 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 A0A0X1KG70 313 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 DVL1O14640 695 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 NDUFA2O43678 99 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 TPPPO94811 219 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 AVPP01185 164 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 HLA-DQB1P01920 261 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 HIST1H1DP16402 221 aaKnown RBP12.42□□□□□ -0.42
TRIM28-207ENST00000597136 MNDAP41218 407 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 DVL1P1P54792 670 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-207ENST00000597136 TAS2R20P59543 309 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 GNB2P62879 340 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 PAX2Q02962 417 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 COL10A1Q03692 680 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF260Q3ZCT1 412 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 FAM131AQ6UXB0 335 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 BAIAP2L2Q6UXY1 529 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF788Q6ZQV5 615 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 IL17RELQ6ZVW7 336 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 SUMF2Q8NBJ7 301 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 OR4M2Q8NGB6 313 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 SDSLQ96GA7 329 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 ZMAT3Q9HA38 289 aaKnown RBP12.42□□□□□ -0.42
TRIM28-207ENST00000597136 CLN8Q9UBY8 286 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 MAB21L2Q9Y586 359 aa12.42□□□□□ -0.42
TRIM28-207ENST00000597136 A8MXK9 166 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 MFNGO00587 321 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 PSPNO60542 156 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 FOXH1O75593 365 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 GLAP06280 429 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 IL18Q14116 193 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 C17orf107Q6ZR85 190 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 NLRC3Q7RTR2 1065 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 GLCCI1Q86VQ1 547 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 BPIFB2Q8N4F0 458 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 ZNRF1Q8ND25 227 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 S100ZQ8WXG8 99 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 ST8SIA4Q92187 359 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 ABHD1Q96SE0 405 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 TSC22D3Q99576 134 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 SULT4A1Q9BR01 284 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 FAAP24Q9BTP7 215 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 DPCDQ9BVM2 203 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-207ENST00000597136 DNTTIP1Q9H147 329 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 AUNIPQ9H7T9 357 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 KCNS2Q9ULS6 477 aa12.41□□□□□ -0.42
TRIM28-207ENST00000597136 TRAV20A0A0B4J274 112 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 TMEM82A0PJX8 343 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 TMEM235A6NFC5 223 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 C22orf46C9J442 243 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 MCRIP1C9JLW8 97 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 HSPB6O14558 160 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF737O75373 536 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 MELTFP08582 738 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 GSTP1P09211 210 aaKnown RBP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 PTHLHP12272 177 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 PTBP1P26599 531 aaKnown RBP eCLIP12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF45Q02386 682 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ARL6IP1Q15041 203 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 ZNF79Q15937 498 aa12.4□□□□□ -0.42
TRIM28-207ENST00000597136 CR1LQ2VPA4 569 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms