RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 LSM3P62310 102 aaKnown RBP14.28□□□□□ -0.12
TOP3A-220ENST00000585031 TPBGQ13641 420 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 SPCS2Q15005 226 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 SSX1Q16384 188 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 C9orf152Q5JTZ5 239 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 OR2G6Q5TZ20 316 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 ZFAND6Q6FIF0 208 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 EGFL6Q8IUX8 553 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 NOL4LQ96MY1 436 aaPredicted RBP14.28□□□□□ -0.12
TOP3A-220ENST00000585031 INTS14Q96SY0 518 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 MNTQ99583 582 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 NRIP2Q9BQI9 281 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 HES4Q9HCC6 221 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 PALMDQ9NP74 551 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 HHLA2Q9UM44 414 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 KLHDC2Q9Y2U9 406 aa14.28□□□□□ -0.12
TOP3A-220ENST00000585031 LOC100506127A0A0U1RQW1 187 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 NOS1APO75052 506 aaPredicted RBP14.27□□□□□ -0.13
TOP3A-220ENST00000585031 OR2F2O95006 317 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 VBP1P61758 197 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 LIPKQ5VXJ0 399 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 TPRX1Q8N7U7 411 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF485Q8NCK3 441 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 TBX5Q99593 518 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 CHCHD6Q9BRQ6 235 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 OR51E2Q9H255 320 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 EXOSC4Q9NPD3 245 aaKnown RBP14.27□□□□□ -0.13
TOP3A-220ENST00000585031 BABAM2Q9NXR7 383 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 HERC2O95714 4834 aa14.27□□□□□ -0.13
TOP3A-220ENST00000585031 OR5B21A6NL26 309 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 F8VVB4 439 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 F8VWA3 439 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 NXPH2O95156 264 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF182P17025 639 aaPredicted RBP14.26□□□□□ -0.13
TOP3A-220ENST00000585031 ECI1P42126 302 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 EDDM3BP56851 147 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 NCS1P62166 190 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 GPR50Q13585 617 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 SYS1Q8N2H4 156 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF676Q8N7Q3 588 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 KLHL30-AS1Q8NEE0 82 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF714Q96N38 554 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 DCSTAMPQ9H295 470 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 TMEM133Q9H2Q1 129 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 LINC00527Q9UJ94 153 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 TMEM14AQ9Y6G1 99 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 SESN1Q9Y6P5 492 aa14.26□□□□□ -0.13
TOP3A-220ENST00000585031 A0A1W2PQL4 384 aaPredicted RBP14.25□□□□□ -0.13
TOP3A-220ENST00000585031 TMEM82A0PJX8 343 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 NUDT19A8MXV4 375 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 H3BUI4 141 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 HTR1DP28221 377 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 MAP2K3P46734 347 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 HAAOP46952 286 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 ERVK11-1P61568 191 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF85Q03923 595 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 TRAM1Q15629 374 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 PLCXD3Q63HM9 321 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 ADAMTSL5Q6ZMM2 481 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 ASCC1Q8N9N2 400 aaKnown RBP14.25□□□□□ -0.13
TOP3A-220ENST00000585031 HAVCR2Q8TDQ0 301 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 CLEC7AQ9BXN2 247 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 SLC22A13Q9Y226 551 aa14.25□□□□□ -0.13
TOP3A-220ENST00000585031 J3QLW9 94 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 J3QT63 122 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 SELENOFO60613 162 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 ZNF19P17023 458 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 SLC6A1P30531 599 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 OR3A4PP47883 348 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 GBX2P52951 348 aaPredicted RBP14.24□□□□□ -0.13
TOP3A-220ENST00000585031 RAB25P57735 213 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 PSMA6P60900 246 aaKnown RBP14.24□□□□□ -0.13
TOP3A-220ENST00000585031 DEFB136Q30KP8 78 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 UTF1Q5T230 341 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 DYNC2LI1Q8TCX1 351 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 THEM6Q8WUY1 208 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 AKR1E2Q96JD6 320 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 C4orf36Q96KX1 117 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 CCDC59Q9P031 241 aaKnown RBP14.24□□□□□ -0.13
TOP3A-220ENST00000585031 GSTK1Q9Y2Q3 226 aa14.24□□□□□ -0.13
TOP3A-220ENST00000585031 CCL24O00175 119 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 IGLV3-1P01715 115 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 GALP22466 123 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 SOX6P35712 828 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 MRPL28Q13084 256 aaKnown RBP14.23□□□□□ -0.13
TOP3A-220ENST00000585031 KCTD18Q6PI47 426 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-220ENST00000585031 PLEKHG7Q6ZR37 379 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 LINC00299Q6ZSB3 139 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 FAM220AQ7Z4H9 259 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 KCTD20Q7Z5Y7 419 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-220ENST00000585031 OR52N4Q8NGI2 321 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 OTOSQ8NHW6 89 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 CAPSLQ8WWF8 208 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 CITED4Q96RK1 184 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 DPM3Q9P2X0 92 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 PIGLQ9Y2B2 252 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 ALMS1Q8TCU4 4167 aa14.23□□□□□ -0.13
TOP3A-220ENST00000585031 PQLC2LA1A4F0 135 aa14.22□□□□□ -0.13
TOP3A-220ENST00000585031 FAM172BPA6NC97 362 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms