RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 HRES1P13985 223 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 ATF1P18846 271 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 M6PRP20645 277 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 AQP5P55064 265 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 TAF9Q16594 264 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 DEFB134Q4QY38 66 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 PDZD11Q5EBL8 140 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 LYZL2Q7Z4W2 148 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 ZFP82Q8N141 532 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 OR2K2Q8NGT1 345 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 ACTL9Q8TC94 416 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 CLDN23Q96B33 292 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 OTUB2Q96DC9 234 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 MRAP2Q96G30 205 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 LINC01587Q99440 93 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 FAAP24Q9BTP7 215 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 ULBP1Q9BZM6 244 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 CHMP4BQ9H444 224 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 GPR179Q6PRD1 2367 aa1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 BAZ1BQ9UIG0 1483 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-209ENST00000583441 IGKV1OR2-108A0A075B7D4 117 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ERICH2A1L162 156 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 TMEM250H0YL14 139 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 SLC31A1O15431 190 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 SYNGR2O43760 224 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 PSIP1O75475 530 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 CBR3O75828 277 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 GPR75O95800 540 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 PDYNP01213 254 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 PRPS1L1P21108 318 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 COL8A2P25067 703 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 CD34P28906 385 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 CASQ1P31415 396 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 PLTPP55058 493 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 FOXA1P55317 472 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 TPBGQ13641 420 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 BCL2A1Q16548 175 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 RBM48Q5RL73 367 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 OLIG3Q7RTU3 272 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 TMEM25Q86YD3 366 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ZIC4Q8N9L1 334 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 PDCD6IPQ8WUM4 868 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 LRRC45Q96CN5 670 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 DDIT4LQ96D03 193 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ATP6V1G3Q96LB4 118 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 MED10Q9BTT4 135 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ZNF436Q9C0F3 470 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 GABARAPL1Q9H0R8 117 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 COMMD9Q9P000 198 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 NAGKQ9UJ70 344 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ENPP5Q9UJA9 477 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 ZNF391Q9UJN7 358 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 POMPQ9Y244 141 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 C2orf16Q68DN1 1984 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 MAP3K19Q56UN5 1328 aa1.86□□□□□ -2.11
SMCHD1-209ENST00000583441 KIAA1671Q9BY89 1806 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 PHYHO14832 338 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 UGT2B11O75310 529 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 NPPAP01160 153 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 TRGV3P03979 118 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 IGKV5-2P06315 115 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 SLC35E2BP0CK96 405 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 SPNP16150 400 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 RHOAP61586 193 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 MMDQ15546 238 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 ZBTB6Q15916 424 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 ZNF141Q15928 474 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 OR10J3Q5JRS4 329 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 NIT1Q86X76 327 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 FER1L6-AS1Q8NA97 138 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 GATD1Q8NB37 220 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 GTF2H4Q92759 462 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 APOBEC3DQ96AK3 386 aaPredicted RBP1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 CCDC127Q96BQ5 260 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 CMBLQ96DG6 245 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 PGLYRP3Q96LB9 341 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 PKMYT1Q99640 499 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 TAPBPLQ9BX59 468 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 MCTS1Q9ULC4 181 aaKnown RBP1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 TRIP11Q15643 1979 aa1.85□□□□□ -2.11
SMCHD1-209ENST00000583441 SPATA31E1Q6ZUB1 1445 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 SSH2Q76I76 1423 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 SETD1AO15047 1707 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 A0A1W2PNN7 141 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 SULT1C2O00338 296 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 PSCAO43653 123 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 CYTH3O43739 400 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 TNFAIP8O95379 198 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 CPSF4O95639 269 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 GUSBP08236 651 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 P0C880 135 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 SYT1P21579 422 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 CRABP2P29373 138 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 HSPA13P48723 471 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 OR2B6P58173 313 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 RAB31Q13636 194 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 CASP8Q14790 479 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 PAFAH1B3Q15102 231 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 ZCWPW2Q504Y3 356 aa1.84□□□□□ -2.11
SMCHD1-209ENST00000583441 CLEC6AQ6EIG7 209 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms