RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 IFT46Q9NQC8 304 aa1.75□□□□□ -2.13
SMCHD1-204ENST00000581226 SNX24Q9Y343 169 aa1.75□□□□□ -2.13
SMCHD1-204ENST00000581226 ATRNO75882 1429 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 TMEM94Q12767 1356 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 LCTP09848 1927 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CACNA1SQ13698 1873 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 F5H5P2 479 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 K7ERQ8 282 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 SGCEO43556 437 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 SLC37A4O43826 429 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CA2P00918 260 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CECR9P0C854 216 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 SLC35E2BP0CK96 405 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CRABP2P29373 138 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 IL12BP29460 328 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 MAGEA6P43360 314 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CD164Q04900 197 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 XRCC4Q13426 336 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 CEACAM21Q3KPI0 293 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 UBE2NLQ5JXB2 153 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 TMEM215Q68D42 235 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 ERICH5Q6P6B1 374 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 LYPD6Q86Y78 171 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 TRIML2Q8N7C3 387 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 OR4K17Q8NGC6 315 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 APOBEC3DQ96AK3 386 aaPredicted RBP1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 YPEL4Q96NS1 127 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 LINC01587Q99440 93 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 WDR55Q9H6Y2 383 aaPredicted RBP1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 SDHAF3Q9NRP4 125 aa1.74□□□□□ -2.13
SMCHD1-204ENST00000581226 GOLGA8QA0A0J9YX86 632 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 A0A1B0GX12 115 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 C8orf87E5RJ46 101 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 RNASEK-C17orf49H0YIS7 233 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 H3BP45 60 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 YKT6O15498 198 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 PDCD6O75340 191 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 EPPINO95925 133 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 CNTFRP26992 372 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 DHRS2Q13268 280 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 TRAM1Q15629 374 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 HBMQ6B0K9 141 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 UGT2A3Q6UWM9 527 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 CYHR1Q6ZMK1 362 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 CLEC20AQ6ZU45 233 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 CYP4Z1Q86W10 505 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 SELENOHQ8IZQ5 122 aaKnown RBP1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 OR8G5Q8NG78 346 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 C20orf166-AS1Q96NR2 134 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 ACBD6Q9BR61 282 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 SUCNR1Q9BXA5 334 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 TSSK6Q9BXA6 273 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 DNAJC27Q9NZQ0 273 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 NAGKQ9UJ70 344 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 PLXNB1O43157 2135 aa1.73□□□□□ -2.13
SMCHD1-204ENST00000581226 BRD4O60885 1362 aaPredicted RBP1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 NRCAMQ92823 1304 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 ARAP3Q8WWN8 1544 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 A0A1B0GU33 70 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 PGPA6NDG6 321 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 IQCF5A8MTL0 148 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 H3BMM0 161 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 M0QXV9 152 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 UPK2O00526 184 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 POLR3GO15318 223 aaPredicted RBP1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 NDUFS6O75380 124 aaKnown RBP1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 SOD3P08294 240 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 NQO2P16083 231 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 TTPAP49638 278 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 VSNL1P62760 191 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 ZNF181Q2M3W8 571 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 OR10J3Q5JRS4 329 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 Q8NAQ8 132 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 ZNF738Q8NE65 137 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 UBE2WQ96B02 151 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 SERPINB11Q96P15 392 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 GOLPH3Q9H4A6 298 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 METTL17Q9H7H0 456 aaPredicted RBP1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 TREM1Q9NP99 234 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 TAS2R13Q9NYV9 303 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 SLC22A14Q9Y267 594 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 USH1CQ9Y6N9 552 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 DOCK6Q96HP0 2047 aa1.72□□□□□ -2.13
SMCHD1-204ENST00000581226 TRPM6Q9BX84 2022 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 CHD2O14647 1828 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 DNMT1P26358 1616 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 TRAV8-3A0A0A6YYJ7 113 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 PCNX2A6NKB5 2137 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 M0QX08 132 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 TCF21O43680 179 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 LDOC1O95751 146 aaPredicted RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 FADS2O95864 444 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 HLA-AP01891 365 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 GIMD1P0DJR0 217 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 GTF2F2P13984 249 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 CD99P14209 185 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 CSRP1P21291 193 aaKnown RBP1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 DSTNP60981 165 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 TSPAN5P62079 268 aa1.71□□□□□ -2.14
SMCHD1-204ENST00000581226 PRDX1Q06830 199 aaKnown RBP1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms