RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 COQ2Q96H96 371 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 TMEM246Q9BRR3 403 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 CA11O75493 328 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 EFNA4P52798 201 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF788Q6ZQV5 615 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 GLCCI1Q86VQ1 547 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 MRPL30Q8TCC3 161 aaKnown RBP20.92■□□□□ 0.94
SHMT1-207ENST00000580002 ANAPC10Q9UM13 185 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 VPS13CQ709C8 3753 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 TRAV38-1A0A0B4J264 116 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 M0QYG6 137 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 NAPSAO96009 420 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 MT-ND4P03905 459 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 SPNP16150 400 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 BTG1P62324 171 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 ARL6IP1Q15041 203 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 SETD6Q8TBK2 473 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 SDSLQ96GA7 329 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 IFT46Q9NQC8 304 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 DLL4Q9NR61 685 aa20.92■□□□□ 0.94
SHMT1-207ENST00000580002 HOGA1Q86XE5 327 aa20.91■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF525Q8N782 197 aa20.91■□□□□ 0.94
SHMT1-207ENST00000580002 DCTN5Q9BTE1 182 aa20.91■□□□□ 0.94
SHMT1-207ENST00000580002 CHMP1AQ9HD42 196 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-207ENST00000580002 HRASLSQ9HDD0 168 aa20.91■□□□□ 0.94
SHMT1-207ENST00000580002 PPIHO43447 177 aaKnown RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 IGHV2-70P01814 119 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 RCC1P18754 421 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 GLIPR1P48060 266 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 RFX2P48378 723 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 GRK1Q15835 563 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 RSBN1Q5VWQ0 802 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF497Q6ZNH5 498 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 TINAGL1Q9GZM7 467 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 C12orf4Q9NQ89 552 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 CTSZQ9UBR2 303 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 ASH1LQ9NR48 2969 aaKnown RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 VGLL3A8MV65 326 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 K7N7A8 449 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 TMPRSS2O15393 492 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 GLAP06280 429 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 ASAH1Q13510 395 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 RBM39Q14498 530 aaKnown RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 EDDM3AQ14507 147 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 GDPD3Q7L5L3 318 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 SNX22Q96L94 193 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF665Q9H7R5 613 aa20.9■□□□□ 0.94
SHMT1-207ENST00000580002 SEBOXQ9HB31 216 aaPredicted RBP20.9■□□□□ 0.94
SHMT1-207ENST00000580002 PMP2P02689 132 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 TK1P04183 234 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 NAT1P18440 290 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 BTCP35070 178 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 MRPS15P82914 257 aaKnown RBP20.89■□□□□ 0.93
SHMT1-207ENST00000580002 ATPAF1Q5TC12 328 aaPredicted RBP20.89■□□□□ 0.93
SHMT1-207ENST00000580002 TMEM185AQ8NFB2 350 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 BEST4Q8NFU0 473 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 OR4C16Q8NGL9 310 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 UBALD1Q8TB05 177 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 OCEL1Q9H607 264 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 KIF25Q9UIL4 384 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 ARID1AO14497 2285 aa20.89■□□□□ 0.93
SHMT1-207ENST00000580002 ISPDA4D126 451 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 SIGLEC5O15389 551 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 LYRM1O43325 122 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 ADAM20O43506 726 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 CSN2P05814 226 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 RCVRNP35243 200 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 MRPS11P82912 194 aaKnown RBP20.88■□□□□ 0.93
SHMT1-207ENST00000580002 KIAA2026Q5HYC2 2103 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 OR56B4Q8NH76 319 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 NARFLQ9H6Q4 476 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 Q9N2K0 584 aa20.88■□□□□ 0.93
SHMT1-207ENST00000580002 HRH1P35367 487 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 ACTBP60709 375 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 ACTG1P63261 375 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 SHEQ5VZ18 495 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 ZNF561Q8N587 486 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 TMEM229BQ8NBD8 167 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 COX4I2Q96KJ9 171 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 CHODLQ9H9P2 273 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 CSF1P09603 554 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 DTYMKP23919 212 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 KRBOX4Q5JUW0 171 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 STEAP1BQ6NZ63 245 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 NRARPQ7Z6K4 114 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 GAPTQ8N292 157 aa20.87■□□□□ 0.93
SHMT1-207ENST00000580002 ZNF736B4DX44 427 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-207ENST00000580002 H3BUI4 141 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 SCTP09683 121 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 GSTT2P0CG29 244 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 GSTT2BP0CG30 244 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 CBX5P45973 191 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 PERPQ96FX8 193 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 MYOZ1Q9NP98 299 aaPredicted RBP20.86■□□□□ 0.93
SHMT1-207ENST00000580002 APCP25054 2843 aa20.86■□□□□ 0.93
SHMT1-207ENST00000580002 SDCBPO00560 298 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-207ENST00000580002 ECDO95905 644 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-207ENST00000580002 SSTR2P30874 369 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 MDH2P40926 338 aaKnown RBP20.85■□□□□ 0.93
SHMT1-207ENST00000580002 CCR6P51684 374 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms