RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 KPTNQ9Y664 436 aa19.52■□□□□ 0.72
VPS53-211ENST00000571805 ZDBF2Q9HCK1 2354 aa19.52■□□□□ 0.71
VPS53-211ENST00000571805 COLCA2A8K830 154 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 TUSC2O75896 110 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 C1QL1O75973 258 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 SYNGR4O95473 234 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 CRYBA1P05813 215 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 JMJD7P0C870 316 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 RAB13P51153 203 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 MPV17LQ2QL34 196 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 TTTY12Q9BZ98 90 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 C19orf12Q9NSK7 152 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 UBE2J1Q9Y385 318 aaPredicted RBP19.51■□□□□ 0.71
VPS53-211ENST00000571805 IGKV1D-13A0A0B4J2D9 117 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 A0A1W2PNU3 283 aaPredicted RBP19.51■□□□□ 0.71
VPS53-211ENST00000571805 SLC22A20A6NK97 555 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 IGKV1-13P0DP09 117 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 CAMLGP49069 296 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 PPT1P50897 306 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 TSC22D1Q15714 1073 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 GUK1Q16774 197 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 GAPTQ8N292 157 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 OR2C3Q8N628 320 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 HSD17B11Q8NBQ5 300 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 POM121L2Q96KW2 1035 aa19.51■□□□□ 0.71
VPS53-211ENST00000571805 IGKV1-6A0A0C4DH72 117 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 ZNF724A8MTY0 619 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 RAB5CP51148 216 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 RAB1AP62820 205 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 OR1C1Q15619 314 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 ETV3LQ6ZN32 361 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 MKXQ8IYA7 352 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 LILRB1Q8NHL6 650 aaPredicted RBP19.5■□□□□ 0.71
VPS53-211ENST00000571805 ZNF552Q9H707 407 aaPredicted RBP19.5■□□□□ 0.71
VPS53-211ENST00000571805 STRAPQ9Y3F4 350 aaKnown RBP19.5■□□□□ 0.71
VPS53-211ENST00000571805 FAM24AA6NFZ4 105 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 ZNF883P0CG24 379 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 HMGN3Q15651 99 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 SPIN3Q5JUX0 258 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 ZNF695Q8IW36 515 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 ZNF565Q8N9K5 539 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 OR5A2Q8NGI9 324 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 GPHA2Q96T91 129 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 RNF122Q9H9V4 155 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 PLA2G3Q9NZ20 509 aa19.5■□□□□ 0.71
VPS53-211ENST00000571805 TRAPPC2LH3BP13 241 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 SYNGR1O43759 233 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 NKX2-1P43699 371 aaPredicted RBP19.49■□□□□ 0.71
VPS53-211ENST00000571805 ASCL1P50553 236 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 AVPI1Q5T686 147 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 APH1AQ96BI3 265 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 IGSF23A1L1A6 192 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 POLR2GP62487 172 aaKnown RBP eCLIP19.49■□□□□ 0.71
VPS53-211ENST00000571805 TMEM251Q8N6I4 163 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 SMCO4Q9NRQ5 59 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 ATP23Q9Y6H3 246 aa19.49■□□□□ 0.71
VPS53-211ENST00000571805 HSPB6O14558 160 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 ARR3P36575 388 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 SUMF1Q8NBK3 374 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 AHCTF1Q8WYP5 2266 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 ZNF407Q9C0G0 2248 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 KIR2DS1A0A191URI9 304 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 CD300LBA8K4G0 201 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 KIR2DS4P43632 304 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 KIR2DS1Q14954 304 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 OR5P3Q8WZ94 311 aa19.48■□□□□ 0.71
VPS53-211ENST00000571805 CLEC18AA5D8T8 446 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 PRH1P02810 166 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 UCP1P25874 307 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 PAX6P26367 422 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 HOXA1P49639 335 aaPredicted RBP19.47■□□□□ 0.71
VPS53-211ENST00000571805 NMSQ5H8A3 153 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 CXorf66Q5JRM2 361 aaPredicted RBP19.47■□□□□ 0.71
VPS53-211ENST00000571805 DCAF10Q5QP82 559 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 NUFIP2Q7Z417 695 aaKnown RBP19.47■□□□□ 0.71
VPS53-211ENST00000571805 CLEC18CQ8NCF0 446 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 SPIN2AQ99865 258 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 SPIN2BQ9BPZ2 258 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 GPR87Q9BY21 358 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 CCL28Q9NRJ3 127 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 K7N7A8 449 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 ADAM20O43506 726 aa19.47■□□□□ 0.71
VPS53-211ENST00000571805 DNAJC13O75165 2243 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 LILRA1O75019 489 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 CTXN2P0C2S0 81 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 PRKACAP17612 351 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 PCSK4Q6UW60 755 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 C20orf204Q6ZNR8 217 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 TMEM182Q6ZP80 229 aaPredicted RBP19.46■□□□□ 0.71
VPS53-211ENST00000571805 LINC00696Q6ZRV3 163 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 SUMF2Q8NBJ7 301 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 PLPPR1Q8TBJ4 325 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 MRPL30Q8TCC3 161 aaKnown RBP19.46■□□□□ 0.71
VPS53-211ENST00000571805 NEK7Q8TDX7 302 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 GTF3AQ92664 365 aaKnown RBP19.46■□□□□ 0.71
VPS53-211ENST00000571805 ABHD14BQ96IU4 210 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 HIST1H2AAQ96QV6 131 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 EGLN1Q9GZT9 426 aa19.46■□□□□ 0.71
VPS53-211ENST00000571805 EIF5A2Q9GZV4 153 aaKnown RBP19.46■□□□□ 0.71
VPS53-211ENST00000571805 LYRM2Q9NU23 88 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms