RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ALOX5APP20292 161 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 SIKE1Q9BRV8 207 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 IL1RAPQ9NPH3 570 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 COPS3Q9UNS2 423 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 KLK5Q9Y337 293 aaPredicted RBP13.79□□□□□ -0.2
CLK3-227ENST00000570296 WSB1Q9Y6I7 421 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 G3V318 75 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 NME4O00746 187 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 SH2D1BO14796 132 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 OR2H2O95918 312 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 CGB3P0DN86 165 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 CGB7P0DN87 165 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 CD1BP29016 333 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 BNIP1Q12981 228 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 ZNF829Q3KNS6 432 aaPredicted RBP13.78□□□□□ -0.2
CLK3-227ENST00000570296 KRBOX4Q5JUW0 171 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 SLC16A12Q6ZSM3 486 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 OR14K1Q8NGZ2 314 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 OTULINQ96BN8 352 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 COQ2Q96H96 371 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 MROQ9BYG7 248 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 PLEKHA1Q9HB21 404 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 EXOSC4Q9NPD3 245 aaKnown RBP13.78□□□□□ -0.2
CLK3-227ENST00000570296 TAS2R1Q9NYW7 299 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 LAMP5Q9UJQ1 280 aa13.78□□□□□ -0.2
CLK3-227ENST00000570296 DNAH2Q9P225 4427 aa13.77□□□□□ -0.2
CLK3-227ENST00000570296 A0A0G2JND7 137 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 A6NIN4 97 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 EDF1O60869 148 aaKnown RBP13.77□□□□□ -0.21
CLK3-227ENST00000570296 RGS11O94810 467 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 HSPB1P04792 205 aaKnown RBP13.77□□□□□ -0.21
CLK3-227ENST00000570296 PRKACAP17612 351 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 RRM2P31350 389 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 NPBWR2P48146 333 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 FUT6P51993 359 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 Q6ZSR3 168 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 TMEM104Q8NE00 496 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 BTBD10Q9BSF8 475 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 OR51V1Q9H2C8 321 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 LINC00574Q9H8X3 128 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 CALYQ9NYX4 217 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 IDI2-AS1Q9NZ38 188 aa13.77□□□□□ -0.21
CLK3-227ENST00000570296 TRAV41A0A0B4J266 112 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 ZNF254O75437 659 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 CNIH1O95406 144 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 SEMG1P04279 462 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 BCL3P20749 454 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 REG1BP48304 166 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 GNG10P50151 68 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 SNU13P55769 128 aaKnown RBP13.76□□□□□ -0.21
CLK3-227ENST00000570296 MINDY2Q8NBR6 621 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 OR9Q2Q8NGE9 314 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 RCN3Q96D15 328 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 KCTD14Q9BQ13 255 aaPredicted RBP13.76□□□□□ -0.21
CLK3-227ENST00000570296 OSBPL10Q9BXB5 764 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 KRTAP4-5Q9BYR2 181 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 ARMC1Q9NVT9 282 aa13.76□□□□□ -0.21
CLK3-227ENST00000570296 A0A1B0GTI1 187 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 CYB5AP00167 134 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 IL1AP01583 271 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 F2RL1P55085 397 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 ZNF565Q8N9K5 539 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 MOB1AQ9H8S9 216 aa13.75□□□□□ -0.21
CLK3-227ENST00000570296 DNAH17Q9UFH2 4485 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 NDUFAB1O14561 156 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 ATP6V0E1O15342 81 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 GLP1RP43220 463 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 ROM1Q03395 351 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 RAB40BQ12829 278 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 UBE2V2Q15819 145 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 LCN12Q6JVE5 192 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 ZNF679Q8IYX0 411 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 CHST4Q8NCG5 386 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 OR10A7Q8NGE5 316 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 BORCS8Q96FH0 119 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 HOPXQ9BPY8 73 aaPredicted RBP13.74□□□□□ -0.21
CLK3-227ENST00000570296 PPIL3Q9H2H8 161 aaKnown RBP13.74□□□□□ -0.21
CLK3-227ENST00000570296 ZCCHC4Q9H5U6 513 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 PLEKHA3Q9HB20 300 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 HMG20AQ9NP66 347 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 FGFR1OP2Q9NVK5 253 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 ING3Q9NXR8 418 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 GSTK1Q9Y2Q3 226 aa13.74□□□□□ -0.21
CLK3-227ENST00000570296 PRODHO43272 600 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 GATBO75879 557 aaKnown RBP13.73□□□□□ -0.21
CLK3-227ENST00000570296 KRT36O76013 467 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 SOX14O95416 240 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 GASTP01350 101 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 CALCBP10092 127 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 RIDAP52758 137 aaKnown RBP13.73□□□□□ -0.21
CLK3-227ENST00000570296 GNGT1P63211 74 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 ATXN7L3Q14CW9 347 aaPredicted RBP13.73□□□□□ -0.21
CLK3-227ENST00000570296 GLYATQ6IB77 296 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 ELMOD2Q8IZ81 293 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 YIPF7Q8N8F6 280 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 MCUR1Q96AQ8 359 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 PYURFQ96I23 114 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 MBOAT4Q96T53 435 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 COMMD4Q9H0A8 199 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 NCOR1P1Q9H4R4 102 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms