RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TVP23CQ96ET8 276 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 BOD1Q96IK1 185 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 SNX22Q96L94 193 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 GINS3Q9BRX5 216 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 HSF4Q9ULV5 492 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 PPP1R3CQ9UQK1 317 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 CCL1P22362 96 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 SPNS3Q6ZMD2 512 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 GPR27Q9NS67 375 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 ZDHHC8Q9ULC8 765 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 MRPS17Q9Y2R5 130 aaKnown RBP12.53□□□□□ -0.4
VPS35-210ENST00000568784 VPS13AQ96RL7 3174 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 A0A087WZY1 265 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 ZNF587BE7ETH6 402 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 VAMP5O95183 116 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 GDF1P27539 372 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 HLA-BQ31612 363 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 SRXN1Q9BYN0 137 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 TRAPPC2LH3BP13 241 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 RAB35Q15286 201 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 RSPO1Q2MKA7 263 aaPredicted RBP12.53□□□□□ -0.4
VPS35-210ENST00000568784 SPANXN5Q5MJ07 72 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 OR1K1Q8NGR3 316 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 Q8WTZ3 238 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 INTS12Q96CB8 462 aaKnown RBP12.53□□□□□ -0.4
VPS35-210ENST00000568784 RPUSD4Q96CM3 377 aaKnown RBP12.53□□□□□ -0.4
VPS35-210ENST00000568784 CALHM2Q9HA72 323 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 V9GYS6 101 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 EML6Q6ZMW3 1958 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 C5orf49A4QMS7 147 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 PHOX2AO14813 284 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 WDR1O75083 606 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 CXCL1P09341 107 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 BMP5P22003 454 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 ADPRHL1Q8NDY3 354 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 DMBX1Q8NFW5 382 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 ABHD3Q8WU67 409 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 MSI2Q96DH6 328 aaKnown RBP12.52□□□□□ -0.4
VPS35-210ENST00000568784 ZNF665Q9H7R5 613 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 RNF122Q9H9V4 155 aa12.52□□□□□ -0.4
VPS35-210ENST00000568784 CD300LBA8K4G0 201 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 BCL3P20749 454 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 PSG4Q00888 419 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 ALKBH2Q6NS38 261 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 SSX9Q7RTT3 188 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 MKXQ8IYA7 352 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 TMEM171Q8WVE6 324 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 ZNF576Q9H609 170 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 ANAPC10Q9UM13 185 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 A0A1W2PQM1 296 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 CXorf65A6NEN9 183 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 FOLR2P14207 255 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 DTYMKP23919 212 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 IDH3GP51553 393 aaPredicted RBP12.52□□□□□ -0.41
VPS35-210ENST00000568784 ZNF787Q6DD87 383 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 ZNF818PQ6ZRF7 136 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 MEGF10Q96KG7 1140 aa12.52□□□□□ -0.41
VPS35-210ENST00000568784 CHCHD2Q9Y6H1 151 aaPredicted RBP12.52□□□□□ -0.41
VPS35-210ENST00000568784 CACNA1GO43497 2377 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 TRDCB7Z8K6 153 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 CD200P41217 278 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 FUT6P51993 359 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 FGFBP3Q8TAT2 258 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 PSMF1Q92530 271 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 MOB3AQ96BX8 217 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 CABLES2Q9BTV7 478 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 LOC102725191A0A1B0GVB3 256 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 CCL4P13236 92 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 IGFBP7Q16270 282 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 KMT5CQ86Y97 462 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 ERRFI1Q9UJM3 462 aaPredicted RBP12.51□□□□□ -0.41
VPS35-210ENST00000568784 PYY3Q5JQD4 70 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 C17orf82Q86X59 251 aaPredicted RBP12.51□□□□□ -0.41
VPS35-210ENST00000568784 RBMXL1Q96E39 390 aaKnown RBP12.51□□□□□ -0.41
VPS35-210ENST00000568784 FAM210BQ96KR6 192 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 GLRX2Q9NS18 164 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 PISDQ9UG56 409 aa12.51□□□□□ -0.41
VPS35-210ENST00000568784 IGHV5-10-1A0A0J9YXX1 117 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 ZNF816-ZNF321PA0A0X1KG74 233 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 ZNF732B4DXR9 585 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 FAM157AC9JC47 383 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 K7N7A8 449 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 IGLV3-19P01714 112 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 SRFP11831 508 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 SPATA46Q5T0L3 261 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 ZNF100Q8IYN0 542 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 GNPNAT1Q96EK6 184 aaPredicted RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 GALNT14Q96FL9 552 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 MRPL33O75394 65 aaKnown RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 DSCR4P56555 118 aaPredicted RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 RBM11P57052 281 aaKnown RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 ERVFRD-1P60508 538 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 SRPXP78539 464 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 FAM27BQ5VT28 67 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 TMEM222Q9H0R3 208 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 UFSP2Q9NUQ7 469 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 TMEM131Q92545 1883 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 IGKV1D-13A0A0B4J2D9 117 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 SMCO3A2RU48 225 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 RRP8O43159 456 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms