RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 LYRM9A8MSI8 78 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 C8orf87E5RJ46 101 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 C11orf98E9PRG8 122 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 H7C1H1 209 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 K7EM74 188 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 DYNC1I1O14576 645 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FGF17O60258 216 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ATP6V1G2O95670 118 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SEMA4FO95754 770 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 APOEP02649 317 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ARG1P05089 322 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 CRYGDP07320 174 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR5AL1P0C617 328 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 RBMY1CP0DJD4 496 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ADRB3P13945 408 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ZNF708P17019 499 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 PAX6P26367 422 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ADORA2BP29275 332 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 RPL12P30050 165 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 TSFMP43897 325 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 REG1BP48304 166 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 HOXA1P49639 335 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 CDK9P50750 372 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 RAP1GDS1P52306 607 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 AP2S1P53680 142 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 PRR3P79522 188 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 TFAMQ00059 246 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 PSG4Q00888 419 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FLI1Q01543 452 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 GAGE5Q13069 117 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 GAGE6Q13070 117 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ZNF235Q14590 738 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 CLINT1Q14677 625 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 PTGR1Q14914 329 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 NDUFA5Q16718 116 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ZNF630Q2M218 657 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 PRR30Q53SZ7 412 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 SIRPB2Q5JXA9 342 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 UBE2UQ5VVX9 321 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 KDM4DQ6B0I6 523 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 HBMQ6B0K9 141 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 APOOLQ6UXV4 268 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SLC36A1Q7Z2H8 476 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 NIT1Q86X76 327 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 RDH10Q8IZV5 341 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 C1orf158Q8N1D5 194 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ACOT4Q8N9L9 421 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SLC26A10Q8NG04 563 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR2Z1Q8NG97 314 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR10G3Q8NGC4 313 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR10K1Q8NGX5 313 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR4X1Q8NH49 305 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FAM45AQ8TCE6 357 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SPPL2BQ8TCT7 592 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SLC37A2Q8TED4 501 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 NTN5Q8WTR8 489 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 PCNPQ8WW12 178 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 IL1F10Q8WWZ1 152 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 TESCQ96BS2 214 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 TM4SF18Q96CE8 201 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 CNRIP1Q96F85 164 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 ZNF486Q96H40 463 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 BMFQ96LC9 184 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SEC22CQ9BRL7 303 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SRXN1Q9BYN0 137 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 UBXN6Q9BZV1 441 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ARV1Q9H2C2 271 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 LIME1Q9H400 295 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 DSN1Q9H410 356 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 ZNF385DQ9H6B1 395 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 WDR41Q9HAD4 459 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 RHOFQ9HBH0 211 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 C6orf50Q9HD87 102 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 SIX2Q9NPC8 291 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FBXO6Q9NRD1 293 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 DDX19AQ9NUU7 478 aaKnown RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 RBM22Q9NW64 420 aaKnown RBP eCLIP2.33□□□□□ -2.04
VPS35-209ENST00000568642 IDI2-AS1Q9NZ38 188 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 THYN1Q9P016 225 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 RWDD2AQ9UIY3 292 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FBXO5Q9UKT4 447 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 TMCO1Q9UM00 188 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 HHLA2Q9UM44 414 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 MOKQ9UQ07 419 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 PLXNB1O43157 2135 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 IGHV1OR21-1A0A087WYE8 117 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 IGHV1OR15-9A0A0B4J2B8 117 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 FAM240AA0A1B0GVK7 77 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 EFCAB10A6NFE3 127 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 LINC01548A6NM66 108 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SYCE1LA8MT33 242 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 OR11H12B2RN74 326 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 F6UB75 175 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 H7C2Y5 167 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 PSMD12O00232 456 aaPredicted RBP2.32□□□□□ -2.04
VPS35-209ENST00000568642 MFNGO00587 321 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 PFDN6O15212 129 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 UGT2B11O75310 529 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 ENTPD6O75354 484 aa2.32□□□□□ -2.04
VPS35-209ENST00000568642 SLC2A10O95528 541 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms