RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 ERVK13-1Q9NX77 482 aa11.93□□□□□ -0.5
CLN3-222ENST00000566083 TCRBV4S1A1TA0A5B7 111 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 H0YJX3 145 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 JUNBP17275 347 aaPredicted RBP11.92□□□□□ -0.5
CLN3-222ENST00000566083 GABRB1P18505 474 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 LOXL3P58215 753 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 CDK5R1Q15078 307 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 CCDC58Q4VC31 144 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 ABCA11PQ4W5N1 156 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 PAN3Q58A45 887 aaKnown RBP11.92□□□□□ -0.5
CLN3-222ENST00000566083 OXLD1Q5BKU9 147 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 Q6ZS46 218 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 RPEQ96AT9 228 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 COQ2Q96H96 371 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 GPER1Q99527 375 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 LINC00574Q9H8X3 128 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 ZNF286AQ9HBT8 521 aa11.92□□□□□ -0.5
CLN3-222ENST00000566083 H3BNX3 289 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 LY6LH3BQJ8 138 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 PF4P02776 101 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 LPLP06858 475 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 NFYBP25208 207 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 SLC35A2P78381 396 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 GABPB1Q06547 395 aaPredicted RBP11.91□□□□□ -0.5
CLN3-222ENST00000566083 RBM39Q14498 530 aaKnown RBP11.91□□□□□ -0.5
CLN3-222ENST00000566083 ATXN7L3Q14CW9 347 aaPredicted RBP11.91□□□□□ -0.5
CLN3-222ENST00000566083 RSU1Q15404 277 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 HIST2H2BDQ6DRA6 164 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 Q6ZPA2 131 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 CCDC121Q6ZUS5 278 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 CNIH3Q8TBE1 160 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 MRAPQ8TCY5 172 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 KIRREL1Q96J84 757 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 PDCD1LG2Q9BQ51 273 aa11.91□□□□□ -0.5
CLN3-222ENST00000566083 ISG20L2Q9H9L3 353 aaKnown RBP11.91□□□□□ -0.5
CLN3-222ENST00000566083 PAK1IP1Q9NWT1 392 aaPredicted RBP11.91□□□□□ -0.5
CLN3-222ENST00000566083 MEIKINA0A087WXM9 373 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 LOC100130705A0A1B0GUX0 176 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 IRGMA1A4Y4 181 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 IL1AP01583 271 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 OR3A4PP47883 348 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 RAB7AP51149 207 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 MADCAM1Q13477 382 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 C17orf58Q2M2W7 97 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 TMEM95Q3KNT9 176 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 Q8NFD4 153 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 GPR148Q8TDV2 347 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 TNFAIP8L1Q8WVP5 186 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 TOMM40LQ969M1 308 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 NR1H4Q96RI1 486 aaPredicted RBP11.9□□□□□ -0.5
CLN3-222ENST00000566083 JAM3Q9BX67 310 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 GPR61Q9BZJ8 451 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 ING3Q9NXR8 418 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 CALYQ9NYX4 217 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 ZNF281Q9Y2X9 895 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 MOB4Q9Y3A3 225 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 HSPE1-MOB4S4R3N1 261 aa11.9□□□□□ -0.5
CLN3-222ENST00000566083 J3QR06 171 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 CGB3P0DN86 165 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 CGB7P0DN87 165 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 GZMHP20718 246 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 CD24P25063 80 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 GLP1RP43220 463 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 LPCAT4Q643R3 524 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 ZNF529Q6P280 563 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 RPL22L1Q6P5R6 122 aaKnown RBP11.89□□□□□ -0.51
CLN3-222ENST00000566083 ASCL4Q6XD76 172 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 TMPRSS11AQ6ZMR5 421 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 LINC00596Q86U02 117 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 SATL1Q86VE3 508 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 OR8H3Q8N146 312 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 OSR2Q8N2R0 312 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 PHF21AQ96BD5 680 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 RCC1LQ96I51 464 aaKnown RBP11.89□□□□□ -0.51
CLN3-222ENST00000566083 S100A13Q99584 98 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 ZNF649Q9BS31 505 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 AMBNQ9NP70 447 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 IDI2-AS1Q9NZ38 188 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 KIF25Q9UIL4 384 aa11.89□□□□□ -0.51
CLN3-222ENST00000566083 A0A1W2PRX2 142 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM172BPA6NC97 362 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A18PA6NE21 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A16PA6NEW6 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A20PA6NIJ5 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A9PA6NNJ1 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A12PA8MX19 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A5PA8MXJ8 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 NPIPB11E5RHQ5 1161 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 ZNF780AO75290 641 aaPredicted RBP11.88□□□□□ -0.51
CLN3-222ENST00000566083 CSTBP04080 98 aaKnown RBP11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A15PP0C7V4 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A13PP0C7W8 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A14PP0C7W9 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 FAM90A24PP0C7X0 464 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 DCKP27707 260 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 SLC6A1P30531 599 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 GDNFP39905 211 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 PPP3R1P63098 170 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 NHLRC3Q5JS37 347 aa11.88□□□□□ -0.51
CLN3-222ENST00000566083 BAIAP2L2Q6UXY1 529 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms