RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KHDC1LQ5JSQ8 128 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 NKAPLQ5M9Q1 402 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 SLC25A30Q5SVS4 291 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 C8orf86Q6ZUL3 223 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 OR10H4Q8NGA5 316 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 NOL4LQ96MY1 436 aaPredicted RBP12.94□□□□□ -0.34
CLN3-208ENST00000561505 ZNF649Q9BS31 505 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 OSBPL10Q9BXB5 764 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 GABARAPL3Q9BY60 117 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 PSG11Q9UQ72 335 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 AMMECR1Q9Y4X0 333 aaPredicted RBP12.94□□□□□ -0.34
CLN3-208ENST00000561505 OR4C45A6NMZ5 311 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 GYG2O15488 501 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 ZFPL1O95159 310 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 DBTP11182 482 aaKnown RBP12.93□□□□□ -0.34
CLN3-208ENST00000561505 ZNF44P15621 663 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 RAB7AP51149 207 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 C9orf152Q5JTZ5 239 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 UNQ9370/PRO34162Q6UXP9 181 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 ZDHHC13Q8IUH4 622 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 ZNF695Q8IW36 515 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 DRAM1Q8N682 238 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 Q8N6K4 173 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 ZNF565Q8N9K5 539 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 OR51A4Q8NGJ6 313 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 OR13A1Q8NGR1 328 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 OR10AC1Q8NH08 325 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 OR56B4Q8NH76 319 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 HAVCR2Q8TDQ0 301 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 RFKQ969G6 155 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 TOMM40LQ969M1 308 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 RFT1Q96AA3 541 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 RPEQ96AT9 228 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 RAX2Q96IS3 184 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 CIB1Q99828 191 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 CALYQ9NYX4 217 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 GNG8Q9UK08 70 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 MYRFQ9Y2G1 1151 aa12.93□□□□□ -0.34
CLN3-208ENST00000561505 DEGS1O15121 323 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 IL1AP01583 271 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 CCDC159P0C7I6 412 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 ZNF20P17024 532 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 MTNR1BP49286 362 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 ZNF816Q0VGE8 651 aaPredicted RBP12.92□□□□□ -0.34
CLN3-208ENST00000561505 MADCAM1Q13477 382 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 DIAPH2-AS1Q14236 149 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 FAM220AQ7Z4H9 259 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 STPG2Q8N412 459 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 PXT1Q8NFP0 134 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 TRUB1Q8WWH5 349 aaKnown RBP12.92□□□□□ -0.34
CLN3-208ENST00000561505 HRASLS5Q96KN8 279 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 SPACA5Q96QH8 159 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 IDI2-AS1Q9NZ38 188 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 U3KQK5 164 aa12.92□□□□□ -0.34
CLN3-208ENST00000561505 TRAV24A0A0B4J272 114 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 LINC01548A6NM66 108 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 SERPINE3A8MV23 424 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 SLC16A6O15403 523 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 TMEM11P17152 192 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 CDX1P47902 265 aaPredicted RBP12.91□□□□□ -0.34
CLN3-208ENST00000561505 SLC35B1P78383 322 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 RBM39Q14498 530 aaKnown RBP12.91□□□□□ -0.34
CLN3-208ENST00000561505 KIR2DS1Q14954 304 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 ATXN7L3Q14CW9 347 aaPredicted RBP12.91□□□□□ -0.34
CLN3-208ENST00000561505 RSBN1Q5VWQ0 802 aaPredicted RBP12.91□□□□□ -0.34
CLN3-208ENST00000561505 ZNF529Q6P280 563 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 ASCL4Q6XD76 172 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 SLC35E3Q7Z769 313 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 PARP16Q8N5Y8 322 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 KLHL30-AS1Q8NEE0 82 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 OR13C9Q8NGT0 318 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 PELI1Q96FA3 418 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 ZCCHC4Q9H5U6 513 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 KIF25Q9UIL4 384 aa12.91□□□□□ -0.34
CLN3-208ENST00000561505 CCL24O00175 119 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 NFYBP25208 207 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 FASP25445 335 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 C21orf33P30042 268 aaPredicted RBP12.9□□□□□ -0.34
CLN3-208ENST00000561505 ATP6V1E1P36543 226 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 KCNJ3P48549 501 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 SCN1BQ07699 218 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 IL13RA2Q14627 380 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 KISS1Q15726 138 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 TEX38Q6PEX7 206 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 TGIF2LXQ8IUE1 241 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 IZUMO1Q8IYV9 350 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 LINC00311Q8N616 119 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 C8orf31Q8N9H6 132 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 OR5D18Q8NGL1 313 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 CNIH3Q8TBE1 160 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 BARHL1Q9BZE3 327 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 ABCG5Q9H222 651 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 DCLRE1BQ9H816 532 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 NEK6Q9HC98 313 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 PLSCR3Q9NRY6 295 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 SCOCQ9UIL1 159 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 ZNF580Q9UK33 172 aa12.9□□□□□ -0.34
CLN3-208ENST00000561505 EXOGQ9Y2C4 368 aaKnown RBP12.9□□□□□ -0.34
CLN3-208ENST00000561505 DYNC2H1Q8NCM8 4307 aaKnown RBP12.89□□□□□ -0.35
CLN3-208ENST00000561505 H0YJX3 145 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms