RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FAM157AC9JC47 383 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 RAB27BO00194 218 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 WNT9BO14905 357 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 SOCS1O15524 211 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 NDUFA2O43678 99 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 GSTZ1O43708 216 aaPredicted RBP9.84□□□□□ -0.83
LDLR-212ENST00000560467 CA11O75493 328 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 HAND1O96004 215 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 GNB3P16520 340 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 DUSP1P28562 367 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 PRDX2P32119 198 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 RCVRNP35243 200 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 FAUP35544 74 aaKnown RBP9.84□□□□□ -0.83
LDLR-212ENST00000560467 MDH2P40926 338 aaKnown RBP9.84□□□□□ -0.83
LDLR-212ENST00000560467 PMELP40967 661 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 GABRA2P47869 451 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 ERVK11-1P61568 191 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 MADCAM1Q13477 382 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 ZNF146Q15072 292 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 PAN3Q58A45 887 aaKnown RBP9.84□□□□□ -0.83
LDLR-212ENST00000560467 ZNF57Q68EA5 555 aaPredicted RBP9.84□□□□□ -0.83
LDLR-212ENST00000560467 CRIP3Q6Q6R5 217 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 TOMM5Q8N4H5 51 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 CLDND2Q8NHS1 167 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 ZFAND2BQ8WV99 257 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 RAB1CQ92928 201 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 TMEM186Q96B77 213 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 ARHGAP5-AS1Q96IT6 56 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 SOSTQ9BQB4 213 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 NICN1Q9BSH3 213 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 SRRQ9GZT4 340 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 ABCB10Q9NRK6 738 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 HIF1ANQ9NWT6 349 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 V9GYH0 126 aa9.84□□□□□ -0.83
LDLR-212ENST00000560467 PPIAL4EA0A075B759 164 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 A0A0A6YYJ9 748 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 ISPDA4D126 451 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 OOEPA6NGQ2 149 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 OR2AT4A6NND4 320 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 PPIAL4DF5H284 164 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 J3QRK9 145 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 LGALS8O00214 317 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 HPXP02790 462 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 CSF1P09603 554 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 PPIAL4FP0DN26 164 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 GPR6P46095 362 aaPredicted RBP9.83□□□□□ -0.84
LDLR-212ENST00000560467 KCNJ3P48549 501 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 PLA2G7Q13093 441 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 MZT2BQ6NZ67 158 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 C3orf56Q8N813 242 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 OR5D13Q8NGL4 314 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 SMIM4Q8WVI0 70 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 MED30Q96HR3 178 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 ABHD1Q96SE0 405 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 CMSS1Q9BQ75 279 aaKnown RBP9.83□□□□□ -0.84
LDLR-212ENST00000560467 DPCDQ9BVM2 203 aaPredicted RBP9.83□□□□□ -0.84
LDLR-212ENST00000560467 PECRQ9BY49 303 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 IFT22Q9H7X7 185 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 ZMAT3Q9HA38 289 aaKnown RBP9.83□□□□□ -0.84
LDLR-212ENST00000560467 SEBOXQ9HB31 216 aaPredicted RBP9.83□□□□□ -0.84
LDLR-212ENST00000560467 HES4Q9HCC6 221 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 TREM2Q9NZC2 230 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 PPIAL4AQ9Y536 164 aa9.83□□□□□ -0.84
LDLR-212ENST00000560467 TMEM235A6NFC5 223 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 RFPL4AA6NLU0 287 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 POM121CA8CG34 1229 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 C3orf80F5H4A9 247 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 RFPL4AL1F8VTS6 287 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 F8VVB4 439 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 F8VWA3 439 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 TMEM178BH3BS89 294 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 SIRPB1O00241 398 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 UPK1BO75841 260 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 CYB5R3P00387 301 aaPredicted RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 LHBP01229 141 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 HLA-DQB1P01920 261 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 MSMBP08118 114 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 MELTFP08582 738 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 COL8A2P25067 703 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 COMPP49747 757 aaPredicted RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 TMEM33P57088 247 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 MOGAT2Q3SYC2 334 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 ZNF260Q3ZCT1 412 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 SFRP4Q6FHJ7 346 aaPredicted RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 SLC36A1Q7Z2H8 476 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 C6orf201Q7Z4U5 140 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 TRAPPC6BQ86SZ2 158 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 MUC20Q8N307 709 aaPredicted RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 GCSAMQ8N6F7 178 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 ASCC1Q8N9N2 400 aaKnown RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 DEFB108BQ8NET1 73 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 DEDD2Q8WXF8 326 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 GCDHQ92947 438 aaPredicted RBP9.82□□□□□ -0.84
LDLR-212ENST00000560467 YIPF5Q969M3 257 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 FAAP24Q9BTP7 215 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 CHST6Q9GZX3 395 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 C12orf4Q9NQ89 552 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.82□□□□□ -0.84
LDLR-212ENST00000560467 ETAA1Q9NY74 926 aa9.82□□□□□ -0.84
LDLR-212ENST00000560467 MGAT4AQ9UM21 535 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms