RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZFP62Q8NB50 900 aaPredicted RBP11.05□□□□□ -0.64
LDLR-207ENST00000558013 CCDC54Q8NEL0 328 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 LILRB1Q8NHL6 650 aaPredicted RBP11.05□□□□□ -0.64
LDLR-207ENST00000558013 BOD1Q96IK1 185 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 CDX2Q99626 313 aaPredicted RBP11.05□□□□□ -0.64
LDLR-207ENST00000558013 GINS3Q9BRX5 216 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 CCL28Q9NRJ3 127 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ESPL1Q14674 2120 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PPH5 198 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ARGFXA6NJG6 315 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ZNF724A8MTY0 619 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 HS3ST1O14792 307 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 HEXAP06865 529 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 TDGF1P13385 188 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ZNF44P15621 663 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 EPHA1P21709 976 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 RUNX1Q01196 453 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 DCAF12Q5T6F0 453 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 RIPPLY2Q5TAB7 128 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 ZNF100Q8IYN0 542 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 CD300LFQ8TDQ1 290 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 HIST1H2BAQ96A08 127 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 TMEM222Q9H0R3 208 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 COA4Q9NYJ1 87 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 IL36GQ9NZH8 169 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 LOXL2Q9Y4K0 774 aa11.05□□□□□ -0.64
LDLR-207ENST00000558013 BORCS7-ASMTA0A0B4J1R7 106 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 hCG_1809904A0A1W2PP81 198 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PR64 198 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PRV1 198 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 ZNF732B4DXR9 585 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 PROB1E7EW31 1015 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 NEURL1O76050 574 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 SEC11BP0C7V7 166 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 MAGEA5P43359 124 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 PCBD1P61457 104 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 KRBOX4Q5JUW0 171 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 TMEM211Q6ICI0 200 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 ODF3L1Q8IXM7 274 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 RDH5Q92781 318 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 GLRX2Q9NS18 164 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 PQLC2LA1A4F0 135 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 FBP1P09467 338 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 HOXA1P49639 335 aaPredicted RBP11.04□□□□□ -0.64
LDLR-207ENST00000558013 CEBPGP53567 150 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 RBMS3Q6XE24 437 aaKnown RBP11.04□□□□□ -0.64
LDLR-207ENST00000558013 LINC00696Q6ZRV3 163 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 OR2C3Q8N628 320 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 CPNE4Q96A23 557 aaPredicted RBP11.04□□□□□ -0.64
LDLR-207ENST00000558013 SPSB4Q96A44 273 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 REPIN1Q9BWE0 567 aaKnown RBP11.04□□□□□ -0.64
LDLR-207ENST00000558013 PRO3102Q9H379 93 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 RGCCQ9H4X1 137 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 LUZP4Q9P127 313 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 SLC22A20A6NK97 555 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 H3BP45 60 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 RPL36A-HNRNPH2H7BZ11 118 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 PLA2G5P39877 138 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 TRA2AQ13595 282 aaKnown RBP eCLIP11.04□□□□□ -0.64
LDLR-207ENST00000558013 SPATA46Q5T0L3 261 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 COLCA1Q6ZS62 124 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 DPPA2Q7Z7J5 298 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 ZNF695Q8IW36 515 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 SFT2D1Q8WV19 159 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 BIN3Q9NQY0 253 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 SMCO4Q9NRQ5 59 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 POMT1Q9Y6A1 747 aa11.04□□□□□ -0.64
LDLR-207ENST00000558013 TNRC6BQ9UPQ9 1833 aaKnown RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 CACNA1DQ01668 2161 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 SMG1Q96Q15 3661 aaKnown RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PPE2 198 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 TRDCB7Z8K6 153 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 UMAD1C9J7I0 102 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 ATP6V0CP27449 155 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 NKX2-1P43699 371 aaPredicted RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 GNMTQ14749 295 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 GPR157Q5UAW9 335 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 SELENOHQ8IZQ5 122 aaKnown RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 FAM24BQ8N5W8 94 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 Q9N2K0 584 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 FBXO9Q9UK97 447 aaPredicted RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 MED12LQ86YW9 2145 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 A0A0G2JRQ6 117 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 A0A1W2PNU3 283 aaPredicted RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 EIF3GO75821 320 aaKnown RBP eCLIP11.03□□□□□ -0.64
LDLR-207ENST00000558013 LHX2P50458 406 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 GTF3C1Q12789 2109 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 IL13RA2Q14627 380 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 C6orf15Q6UXA7 325 aaPredicted RBP11.03□□□□□ -0.64
LDLR-207ENST00000558013 WDR5BQ86VZ2 330 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 FOXJ2Q9P0K8 574 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 TMED3Q9Y3Q3 217 aa11.03□□□□□ -0.64
LDLR-207ENST00000558013 LAMTOR5O43504 91 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 NAPSAO96009 420 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 SERPINA7P05543 415 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 DUSP3P51452 185 aaPredicted RBP11.02□□□□□ -0.64
LDLR-207ENST00000558013 UCP3P55916 312 aa11.02□□□□□ -0.64
LDLR-207ENST00000558013 HOXA4Q00056 320 aaPredicted RBP11.02□□□□□ -0.64
LDLR-207ENST00000558013 MRPL21Q7Z2W9 205 aaKnown RBP11.02□□□□□ -0.64
LDLR-207ENST00000558013 OR5C1Q8NGR4 320 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms