RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ERVK11-1P61568 191 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 HERV-K104P61576 105 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 LGALSLQ3ZCW2 172 aaPredicted RBP14.3□□□□□ -0.12
LDLR-206ENST00000557958 ABCA11PQ4W5N1 156 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 CLEC18BQ6UXF7 455 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 HS3ST6Q96QI5 342 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 DMRTA2Q96SC8 542 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 DPCDQ9BVM2 203 aaPredicted RBP14.3□□□□□ -0.12
LDLR-206ENST00000557958 Q9N2K0 584 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 ITPR1Q14643 2758 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 FXYD6-FXYD2A0A087WZ82 144 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 TRBV6-6A0A0A6YYG2 114 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 L7N2F9 121 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 M0R233 179 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 SH2D1BO14796 132 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 KNG1P01042 644 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 IFNA2P01563 188 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 TK1P04183 234 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 PI3P19957 117 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 GLRA1P23415 457 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 DUSP1P28562 367 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 FCGR2CP31995 323 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 SEC61A1P61619 476 aaKnown RBP14.29□□□□□ -0.12
LDLR-206ENST00000557958 IGFBP7Q16270 282 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 GSG1LQ6UXU4 331 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 POC1AQ8NBT0 407 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 RELL2Q8NC24 303 aaPredicted RBP14.29□□□□□ -0.12
LDLR-206ENST00000557958 PIK3IP1Q96FE7 263 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 ELMOD3Q96FG2 381 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 FXYD6Q9H0Q3 95 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 RAB18Q9NP72 206 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 TREM2Q9NZC2 230 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 UBQLN2Q9UHD9 624 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 TMA7Q9Y2S6 64 aaKnown RBP14.29□□□□□ -0.12
LDLR-206ENST00000557958 RFPL4AA6NLU0 287 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 DBX1A6NMT0 343 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 FAM25EA8MYX2 175 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 RFPL4AL1F8VTS6 287 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 HSPB6O14558 160 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 DIRAS3O95661 229 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 RBMXP38159 391 aaKnown RBP14.29□□□□□ -0.12
LDLR-206ENST00000557958 UCP3P55916 312 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 MOB1BQ7L9L4 216 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 SLC38A6Q8IZM9 456 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 OR8H3Q8N146 312 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 VRK1Q99986 396 aaPredicted RBP14.29□□□□□ -0.12
LDLR-206ENST00000557958 NUP50Q9UKX7 468 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 ATP23Q9Y6H3 246 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 SPTA1P02549 2419 aa14.29□□□□□ -0.12
LDLR-206ENST00000557958 RP1L1Q8IWN7 2480 aaPredicted RBP14.28□□□□□ -0.12
LDLR-206ENST00000557958 TRAV24A0A0B4J272 114 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 TEX13DA0A0J9YY54 714 aaPredicted RBP14.28□□□□□ -0.12
LDLR-206ENST00000557958 C5orf51A6NDU8 294 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 A6NLC8 198 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 TRDCB7Z8K6 153 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 HS3ST1O14792 307 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 ATXN7O15265 892 aaPredicted RBP14.28□□□□□ -0.12
LDLR-206ENST00000557958 MLNRO43193 412 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 GLRXP35754 106 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 SELENOVP59797 346 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 EXOSC2Q13868 293 aaKnown RBP14.28□□□□□ -0.12
LDLR-206ENST00000557958 ZNF146Q15072 292 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 SLC9A3R2Q15599 337 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 PAN3Q58A45 887 aaKnown RBP14.28□□□□□ -0.12
LDLR-206ENST00000557958 RDH5Q92781 318 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 TOMM40LQ969M1 308 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 MOB3AQ96BX8 217 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 SYT3Q9BQG1 590 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 TLNRD1Q9H1K6 362 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 C1orf123Q9NWV4 160 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 KCNIP3Q9Y2W7 256 aa14.28□□□□□ -0.12
LDLR-206ENST00000557958 A0A1B0GWJ7 208 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 H0YL77 283 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 C16orf97H3BN30 126 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 ZNF250P15622 560 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 SORDQ00796 357 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 SHEQ5VZ18 495 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 CCDC71LQ8N9Z2 235 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 OR5T2Q8NGG2 359 aa14.27□□□□□ -0.12
LDLR-206ENST00000557958 CACNA1BQ00975 2339 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 CRYM-AS1A6NIL9 109 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 B8ZZF3 427 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 CCSO14618 274 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 ARPC5O15511 151 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 MPC2O95563 127 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 KLF3P57682 345 aaPredicted RBP14.27□□□□□ -0.13
LDLR-206ENST00000557958 FXYD4P59646 89 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 SUPT4H1P63272 117 aaKnown RBP14.27□□□□□ -0.13
LDLR-206ENST00000557958 Q6P435 159 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 COQ3Q9NZJ6 369 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 FZR1Q9UM11 496 aa14.27□□□□□ -0.13
LDLR-206ENST00000557958 SHANK1Q9Y566 2161 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 FAM90A27PA6NNH2 459 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 OR2H2O95918 312 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 IGHV3-13P01766 116 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 PRB1P04280 392 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 RPA2P15927 270 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 GNLYP22749 145 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 SSTR2P30874 369 aa14.26□□□□□ -0.13
LDLR-206ENST00000557958 PIGPP57054 158 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms