RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 A0A1W2PPE2 198 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 PDCD6O75340 191 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 FAM27BQ5VT28 67 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 LYZL4Q96KX0 146 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 ANGPTL4Q9BY76 406 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 IL36RNQ9UBH0 155 aa12.9□□□□□ -0.35
CUX1-215ENST00000556210 WNK2Q9Y3S1 2297 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 YKT6O15498 198 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 TIMM8AO60220 97 aaPredicted RBP12.89□□□□□ -0.35
CUX1-215ENST00000556210 NANOS1Q8WY41 292 aaKnown RBP12.89□□□□□ -0.35
CUX1-215ENST00000556210 EDEM2Q9BV94 578 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 FAM117AQ9C073 453 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 IGHEP01854 428 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 EIF2S3P41091 472 aaKnown RBP12.89□□□□□ -0.35
CUX1-215ENST00000556210 MEOX1P50221 254 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 EDDM3BP56851 147 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 TOLLIPQ9H0E2 274 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 CCL28Q9NRJ3 127 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 REV3LO60673 3130 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 A0A0U1RQK1 487 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 RAC2P15153 192 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 SSPNQ14714 243 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 DHRS11Q6UWP2 260 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 THNSL2Q86YJ6 484 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 SIGLEC12Q96PQ1 595 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 GFOD1Q9NXC2 390 aa12.89□□□□□ -0.35
CUX1-215ENST00000556210 KLF7O75840 302 aaPredicted RBP12.88□□□□□ -0.35
CUX1-215ENST00000556210 KRASP01116 189 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 SCTP09683 121 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 FGF5P12034 268 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 CALHM1Q8IU99 346 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 TPRX1Q8N7U7 411 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 OR4A4PQ8NGN8 299 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 M1APQ8TC57 530 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 TAAR9Q96RI9 348 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 A0A1W2PNV4 684 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 E5RGE8 158 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 MFNGO00587 321 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 BMP5P22003 454 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 MRPL14Q6P1L8 145 aaKnown RBP12.88□□□□□ -0.35
CUX1-215ENST00000556210 FIP1L1Q6UN15 594 aaKnown RBP12.88□□□□□ -0.35
CUX1-215ENST00000556210 TIPARPQ7Z3E1 657 aaKnown RBP12.88□□□□□ -0.35
CUX1-215ENST00000556210 WBP1Q96G27 269 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 FAM173AQ9BQD7 235 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 PLK3Q9H4B4 646 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 NSG2Q9Y328 171 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 WDFY4Q6ZS81 3184 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 PPP1R2P9O14990 202 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 RAB5AP20339 215 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 GCH1P30793 250 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 HES3Q5TGS1 186 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 GAPTQ8N292 157 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 CHRNA10Q9GZZ6 450 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 NAA60Q9H7X0 242 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 PLEKHA2Q9HB19 425 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 C19orf12Q9NSK7 152 aa12.88□□□□□ -0.35
CUX1-215ENST00000556210 CARHSP1Q9Y2V2 147 aaKnown RBP12.88□□□□□ -0.35
CUX1-215ENST00000556210 IGHV3-43A0A0B4J1X8 118 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 PQLC2LA1A4F0 135 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 NKX2-6A6NCS4 301 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 SLC22A20A6NK97 555 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 H0YIZ8 118 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 CDIPTO14735 213 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 MT-CO3P00414 261 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 IGHMP01871 453 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 IGHV3-43DP0DP04 118 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 ADCYAP1P18509 176 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 TMEM267Q0VDI3 215 aaPredicted RBP12.87□□□□□ -0.35
CUX1-215ENST00000556210 C4orf17Q53FE4 359 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 FIGNL2A6NMB9 653 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 ZNF724A8MTY0 619 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 FER1L6-AS2Q96M78 137 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 WDR54Q9H977 334 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 MYOZ1Q9NP98 299 aaPredicted RBP12.87□□□□□ -0.35
CUX1-215ENST00000556210 TREM2Q9NZC2 230 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 GNG13Q9P2W3 67 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 GNG12Q9UBI6 72 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 LTBP2Q14767 1821 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 SYNGR1O43759 233 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 AGFG2O95081 481 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 FCGR3AP08637 254 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 PTGDSP41222 190 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 RPL23AP62750 156 aaKnown RBP12.87□□□□□ -0.35
CUX1-215ENST00000556210 ZNF816Q0VGE8 651 aaPredicted RBP12.87□□□□□ -0.35
CUX1-215ENST00000556210 ZNF709Q8N972 641 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 OR5C1Q8NGR4 320 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 HEATR1Q9H583 2144 aaKnown RBP12.87□□□□□ -0.35
CUX1-215ENST00000556210 DEPPQ9NTK1 212 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 FOXJ2Q9P0K8 574 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 LHX6Q9UPM6 363 aa12.87□□□□□ -0.35
CUX1-215ENST00000556210 IGLV3-12A0A075B6K2 115 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 AP4M1O00189 453 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 LY86O95711 162 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 PPYP01298 95 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 ACAA1P09110 424 aaPredicted RBP12.86□□□□□ -0.35
CUX1-215ENST00000556210 ALDH3B1P43353 468 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 PPP1R32Q7Z5V6 425 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 PTX4Q96A99 478 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 IP6K3Q96PC2 410 aa12.86□□□□□ -0.35
CUX1-215ENST00000556210 NIPSNAP3BQ9BS92 247 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms