RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMEM230Q96A57 120 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 RAB39BQ96DA2 213 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 VKORC1Q9BQB6 163 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OR11A1Q9GZK7 315 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OPN3Q9H1Y3 402 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SRA1Q9HD15 236 aaKnown RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 TAS2R4Q9NYW5 299 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 PRR13Q9NZ81 148 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 STRAPQ9Y3F4 350 aaKnown RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 APCP25054 2843 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ARHGAP21Q5T5U3 1957 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 A0A1B0GW64 132 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 CYSRT1A8MQ03 144 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 H3BQ15 152 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 M0R143 59 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 TGOLN2O43493 480 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 GZMBP10144 247 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF708P17019 499 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ALOX5APP20292 161 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SUCLG1P53597 346 aaKnown RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 GFRA1P56159 465 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ERVFRD-1P60508 538 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ANKRD55Q3KP44 614 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 HIKESHIQ53FT3 197 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SEM1Q6ZVN7 128 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 C5orf24Q7Z6I8 188 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 C10orf53Q8N6V4 93 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 HSD17B11Q8NBQ5 300 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 NAXEQ8NCW5 288 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OR4K15Q8NH41 348 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 OR10J5Q8NHC4 309 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 RNASEH2CQ8TDP1 164 aaKnown RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 FRZBQ92765 325 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 FAM46BQ96A09 425 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SARAFQ96BY9 339 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SLC25A36Q96CQ1 311 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 BSCL2Q96G97 398 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 SNHG12Q9BXW3 62 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 ACTR3CQ9C0K3 210 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-216ENST00000552909 C5orf66Q9H5L9 145 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 GPR132Q9UNW8 380 aa6.64□□□□□ -1.35
LIMA1-216ENST00000552909 MED12LQ86YW9 2145 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 IGKV1D-42A0A075B6H8 117 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 BORCS7-ASMTA0A0B4J1R7 106 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 MEGF11A6BM72 1044 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 DLEU1O43261 78 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 FSTP19883 344 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 SRD5A2P31213 254 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 RPS27P42677 84 aaKnown RBP6.63□□□□□ -1.35
LIMA1-216ENST00000552909 NPY4RP50391 375 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 DSCR4P56555 118 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-216ENST00000552909 B3GALT5-AS1P59052 145 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 SRYQ05066 204 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 FDX2Q6P4F2 183 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 PEG10Q86TG7 708 aaKnown RBP6.63□□□□□ -1.35
LIMA1-216ENST00000552909 ABHD5Q8WTS1 349 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 CMBLQ96DG6 245 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 DNAJA3Q96EY1 480 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 SLC25A44Q96H78 314 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-216ENST00000552909 WDYHV1Q96HA8 205 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 SCGB3A2Q96PL1 93 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 GPX7Q96SL4 187 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-216ENST00000552909 ARV1Q9H2C2 271 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 DKKL1Q9UK85 242 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 PITPNC1Q9UKF7 332 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 RAB22AQ9UL26 194 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 VDAC3Q9Y277 283 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 DOCK7Q96N67 2140 aa6.63□□□□□ -1.35
LIMA1-216ENST00000552909 IGLV3-32A0A0A0MS00 114 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF705GA8MUZ8 300 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SOX15O60248 233 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 DFFBO76075 338 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TXNDC12O95881 172 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GLI4P10075 376 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 IGFBP3P17936 291 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 FPR2P25090 351 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 MSX1P28360 303 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GRNP28799 593 aaKnown RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 FHITP49789 147 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 LHX2P50458 406 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 POLR2HP52434 150 aaKnown RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 CLDN15P56746 228 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 RPS4XP62701 263 aaKnown RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SUPT4H1P63272 117 aaKnown RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 DLK1P80370 383 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SPOCK1Q08629 439 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 GAGE1Q13065 139 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 PRR18Q8N4B5 295 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 ASB5Q8WWX0 329 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM234Q8WY98 164 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 KTI12Q96EK9 354 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-216ENST00000552909 FAM210BQ96KR6 192 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM208Q9BTX3 173 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 PRDM14Q9GZV8 571 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 ELOVL3Q9HB03 270 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 SLC22A13Q9Y226 551 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 TMED7-TICAM2A0A0A6YYA0 188 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 A0A1B0GV50 99 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 FIGNL2A6NMB9 653 aa6.62□□□□□ -1.35
LIMA1-216ENST00000552909 CEACAM18A8MTB9 384 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms