RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ACTL6AO96019 429 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 LPAR6P43657 344 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 FBXW9Q5XUX1 488 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 SLC25A40Q8TBP6 338 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 EDARADDQ8WWZ3 215 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 ZNF837Q96EG3 531 aaPredicted RBP14.17□□□□□ -0.14
CUX1-213ENST00000549414 GPR137Q96N19 417 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 OR2D2Q9H210 308 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 MED9Q9NWA0 146 aa14.17□□□□□ -0.14
CUX1-213ENST00000549414 A0A0G2JMM0 328 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PPB8 328 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 A0A1W2PRS3 328 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 KIR3DP1A8MWS1 328 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 A8MXE2 369 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 K7ESF4 209 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 SFTA3P0C7M3 94 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 GNB2P62879 340 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 PJVKQ0ZLH3 352 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 BOD1Q96IK1 185 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 C19orf12Q9NSK7 152 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 FOXJ2Q9P0K8 574 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 PRSS50Q9UI38 385 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 OR2C1O95371 312 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 NDUFA6P56556 154 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 HTD2P86397 168 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 SIGIRRQ6IA17 410 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 NECAP1Q8NC96 275 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 CCL17Q92583 94 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 C10orf35Q96D05 121 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 GAB2Q9UQC2 676 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 ZNF727A8MUV8 499 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 CELA3AP09093 270 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 GNG10P50151 68 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 GUK1Q16774 197 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 PDZD11Q5EBL8 140 aa14.16□□□□□ -0.14
CUX1-213ENST00000549414 NFAM1Q8NET5 270 aaPredicted RBP14.16□□□□□ -0.14
CUX1-213ENST00000549414 FCGR3BO75015 233 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 SCGB2A1O75556 95 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 ACKR3P25106 362 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 COL19A1Q14993 1142 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 IGSF11Q5DX21 431 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 FDX2Q6P4F2 183 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 BTNL3Q6UXE8 466 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 ZNF107Q9UII5 783 aaPredicted RBP14.15□□□□□ -0.14
CUX1-213ENST00000549414 CNIH1O95406 144 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 LIAT1Q6ZQX7 453 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 C1QL2Q7Z5L3 287 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 OR10X1Q8NGY0 326 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 ALX4Q9H161 411 aaPredicted RBP14.15□□□□□ -0.14
CUX1-213ENST00000549414 APOA2P02652 100 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 GABRA4P48169 554 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 FNDC7Q5VTL7 733 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 CEP350Q5VT06 3117 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 HNF1AP20823 631 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 SURF2Q15527 256 aaPredicted RBP14.15□□□□□ -0.14
CUX1-213ENST00000549414 TPRX1Q8N7U7 411 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 RBMXL3Q8N7X1 1067 aaKnown RBP14.15□□□□□ -0.14
CUX1-213ENST00000549414 OR4F5Q8NH21 305 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 PINX1Q96BK5 328 aaKnown RBP14.15□□□□□ -0.14
CUX1-213ENST00000549414 OR4F4Q96R69 305 aa14.15□□□□□ -0.14
CUX1-213ENST00000549414 ZNF705GA8MUZ8 300 aaPredicted RBP14.14□□□□□ -0.15
CUX1-213ENST00000549414 CYB5BO43169 146 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 FCGR3AP08637 254 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 MRPL41Q8IXM3 137 aaKnown RBP14.14□□□□□ -0.15
CUX1-213ENST00000549414 NKX2-6A6NCS4 301 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 KIAA0141Q14154 515 aaPredicted RBP14.14□□□□□ -0.15
CUX1-213ENST00000549414 NUDT19A8MXV4 375 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 CDRT15L2A8MXV6 281 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 J3QRE1 110 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 NMES1Q9C002 83 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 FER1L5A0AVI2 2057 aa14.14□□□□□ -0.15
CUX1-213ENST00000549414 TRDCB7Z8K6 153 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 GPR37O15354 613 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 RBM11P57052 281 aaKnown RBP14.13□□□□□ -0.15
CUX1-213ENST00000549414 UBE2G2P60604 165 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 C1orf87Q8N0U7 546 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 CPEB3Q8NE35 698 aaKnown RBP14.13□□□□□ -0.15
CUX1-213ENST00000549414 ABCD4O14678 606 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 RCC1P18754 421 aaPredicted RBP14.13□□□□□ -0.15
CUX1-213ENST00000549414 UNC119Q13432 240 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 SLC23A3Q6PIS1 610 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 LYG1Q8N1E2 194 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 AQP3Q92482 292 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 OR5AC2Q9NZP5 309 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 ANGPTL6Q8NI99 470 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 SIGLEC12Q96PQ1 595 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 NPDC1Q9NQX5 325 aaPredicted RBP14.13□□□□□ -0.15
CUX1-213ENST00000549414 TNFSF18Q9UNG2 199 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 PCNTO95613 3336 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 J3QT63 122 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 CHST1O43916 411 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 OPN1MWP04001 364 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 CYC1P08574 325 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 OPN1MW2P0DN77 364 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 OPN1MW3P0DN78 364 aa14.13□□□□□ -0.15
CUX1-213ENST00000549414 SONP18583 2426 aaKnown RBP14.12□□□□□ -0.15
CUX1-213ENST00000549414 PRR19A6NJB7 356 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 B3GALNT1O75752 331 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 YIF1AO95070 293 aa14.12□□□□□ -0.15
CUX1-213ENST00000549414 UMODP07911 640 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms