RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 FAM76BQ5HYJ3 339 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 OR2A2Q6IF42 318 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TMEM88Q6PEY1 159 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 OR4A4PQ8NGN8 299 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 ARL11Q969Q4 196 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 MSI2Q96DH6 328 aaKnown RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 RRNAD1Q96FB5 475 aaKnown RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 TMEM56Q96MV1 263 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 MICU1Q9BPX6 476 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 CABLES2Q9BTV7 478 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 RTL8AQ9BWD3 113 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 FGF23Q9GZV9 251 aaPredicted RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 ARV1Q9H2C2 271 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 LIME1Q9H400 295 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 ASCL3Q9NQ33 180 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 OR5AC2Q9NZP5 309 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 MIOXQ9UGB7 285 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 PRSS50Q9UI38 385 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 POLDIP2Q9Y2S7 368 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 TMEM56-RWDD3S4R434 201 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 RTTNQ86VV8 2226 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 DNAJC13O75165 2243 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 CLEC18AA5D8T8 446 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 ZNF503-AS2A6NEH8 195 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 DEGS1O15121 323 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 CEACAM4O75871 244 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 HOXB5P09067 269 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 RAC2P15153 192 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 OPRM1P35372 400 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 WNT5AP41221 380 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 P4HA3Q7Z4N8 544 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 PUSL1Q8N0Z8 303 aaKnown RBP8.45□□□□□ -1.06
SS18-205ENST00000542420 GAPTQ8N292 157 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 C17orf78Q8N4C9 275 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 FAM169BQ8N8A8 192 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 CLEC18CQ8NCF0 446 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 OR51I2Q9H344 312 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 NIT2Q9NQR4 276 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 MTCH1Q9NZJ7 389 aa8.45□□□□□ -1.06
SS18-205ENST00000542420 ZNF407Q9C0G0 2248 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 MEX3AA1L020 520 aaKnown RBP8.44□□□□□ -1.06
SS18-205ENST00000542420 K7EPK0 472 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 GPR31O00270 319 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 FBP1P09467 338 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 FTH1P19P0C7X4 201 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 RNF224P0DH78 156 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 COX5AP20674 150 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 S100GP29377 79 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 NPBWR2P48146 333 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 GPM6AP51674 278 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 FOXG1P55316 489 aaPredicted RBP8.44□□□□□ -1.06
SS18-205ENST00000542420 BLOC1S1P78537 153 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 SPEM2Q0P670 501 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 DMRTC1Q5HYR2 192 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 DHRS7BQ6IAN0 325 aaPredicted RBP8.44□□□□□ -1.06
SS18-205ENST00000542420 ZNF585AQ6P3V2 769 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 Q6ZT83 130 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 UBAC2Q8NBM4 344 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 BPIFCQ8NFQ6 507 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 WNT2BQ93097 391 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 SLAMF9Q96A28 289 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 SARAFQ96BY9 339 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 MARS2Q96GW9 593 aaKnown RBP8.44□□□□□ -1.06
SS18-205ENST00000542420 NARS2Q96I59 477 aaKnown RBP8.44□□□□□ -1.06
SS18-205ENST00000542420 SMIM8Q96KF7 97 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 MMP26Q9NRE1 261 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 PRUNE2Q8WUY3 3088 aa8.44□□□□□ -1.06
SS18-205ENST00000542420 CACNA1GO43497 2377 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 IQCF6A8MYZ5 107 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 MPPED1O15442 326 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 GPR137BO60478 399 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 SLC34A2O95436 690 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 S100A8P05109 93 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 OR5AC1P0C628 307 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 SLC25A6P12236 298 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 AADACP22760 399 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 S100PP25815 95 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 RPL12P30050 165 aaKnown RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 UBE2NP61088 152 aaKnown RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 RSPO4Q2I0M5 234 aaPredicted RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 TMEM268Q5VZI3 342 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 FAM214BQ7L5A3 538 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 MDP1Q86V88 176 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 CBLN2Q8IUK8 224 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 FAM58AQ8N1B3 248 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 RELL2Q8NC24 303 aaPredicted RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 SNIP1Q8TAD8 396 aaKnown RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 C2CD4CQ8TF44 421 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 TMEM222Q9H0R3 208 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 DEFB127Q9H1M4 99 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 TAS2R3Q9NYW6 316 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 LAMA1P25391 3075 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 AHCTF1Q8WYP5 2266 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 C3orf85A0A1B0GTC6 90 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 ZNF729A6NN14 1252 aaPredicted RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 CRYBA1P05813 215 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 FAM157CP0CG43 387 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 CBR1P16152 277 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 CCNOP22674 350 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 GPX4P36969 197 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms