RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NHLRC3Q5JS37 347 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 TCF23Q7RTU1 214 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 LYPD6Q86Y78 171 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 PHC2Q8IXK0 858 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 JAGN1Q8N5M9 183 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 OR4S1Q8NGB4 309 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 OR10K1Q8NGX5 313 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 PHYHIPQ92561 330 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 S100A13Q99584 98 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 CCDC32Q9BV29 185 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 C19orf24Q9BVV8 132 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 STUB1Q9UNE7 303 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 SOX21Q9Y651 276 aaPredicted RBP12.32□□□□□ -0.44
CPSF1-208ENST00000532560 LINC00312Q9Y6C7 94 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 DSCAML1Q8TD84 2053 aa12.32□□□□□ -0.44
CPSF1-208ENST00000532560 A0A0G2JK05 382 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 hCG_1809904A0A1W2PP81 198 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 A0A1W2PPE2 198 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 A0A1W2PR64 198 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 A0A1W2PRV1 198 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 hADV38S2A0JD32 116 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 MEGF11A6BM72 1044 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 DNAJC9-AS1A6NH13 148 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 C17orf98A8MV24 154 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 SLC33A1O00400 549 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-208ENST00000532560 ZNF780AO75290 641 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-208ENST00000532560 HTR3BO95264 441 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 PTTG1O95997 202 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 UCHL1P09936 223 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 CCL3L1P16619 93 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 UBE2E1P51965 193 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 DLX1P56177 255 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 P2RX3P56373 397 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 DEFA1P59665 94 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 DEFA3P59666 94 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 UBA52P62987 128 aaKnown RBP12.31□□□□□ -0.44
CPSF1-208ENST00000532560 KLRD1Q13241 179 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 DEFB112Q30KQ8 113 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 SPANXN2Q5MJ10 180 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 FAM27D1Q5T7N8 215 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 PDZD9Q8IXQ8 264 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 PIP4P2Q8N4L2 257 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 C11orf42Q8N5U0 333 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 FAM216AQ8WUB2 273 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 C1orf147Q96MC9 270 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-208ENST00000532560 UQCC2Q9BRT2 126 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 NDUFB11Q9NX14 153 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 COL6A5A8TX70 2615 aa12.31□□□□□ -0.44
CPSF1-208ENST00000532560 LOC100506127A0A0U1RQW1 187 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 MDFIC2A0A1B0GVS7 189 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 CLDN34H7C241 214 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 DEGS1O15121 323 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 CSTBP04080 98 aaKnown RBP12.3□□□□□ -0.44
CPSF1-208ENST00000532560 ZNF728P0DKX0 622 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 RBM11P57052 281 aaKnown RBP12.3□□□□□ -0.44
CPSF1-208ENST00000532560 ERVFRD-1P60508 538 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 RPS25P62851 125 aaKnown RBP12.3□□□□□ -0.44
CPSF1-208ENST00000532560 PRB3Q04118 309 aaPredicted RBP12.3□□□□□ -0.44
CPSF1-208ENST00000532560 BAMBIQ13145 260 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 GPR176Q14439 515 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 PIGYQ3MUY2 71 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 HCP5Q6MZN7 132 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 CEACAM19Q7Z692 300 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 LINC00596Q86U02 117 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 OSR2Q8N2R0 312 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 SPATA3Q8NHX4 192 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 ZNF714Q96N38 554 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 FAM210AQ96ND0 272 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 CHCHD6Q9BRQ6 235 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 OR51E2Q9H255 320 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 PPA2Q9H2U2 334 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 IFT22Q9H7X7 185 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 TCF7L1Q9HCS4 588 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 PCDHB16Q9NRJ7 776 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 SSR3Q9UNL2 185 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 ING4Q9UNL4 249 aa12.3□□□□□ -0.44
CPSF1-208ENST00000532560 MRPS28Q9Y2Q9 187 aaKnown RBP12.3□□□□□ -0.44
CPSF1-208ENST00000532560 A0A0U1RQK1 487 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 NPFFO15130 113 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 SERPINA2P20848 420 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 GABRA5P31644 462 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 RORCP51449 518 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 PAX5Q02548 391 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 SCN1BQ07699 218 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 SLC22A6Q4U2R8 563 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 HSD17B12Q53GQ0 312 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 AWAT2Q6E213 333 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 TMEM91Q6ZNR0 172 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 LRRTM1Q86UE6 522 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 TPRX1Q8N7U7 411 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-208ENST00000532560 OR4D6Q8NGJ1 314 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 SETD6Q8TBK2 473 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 TMEM203Q969S6 136 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 ZDHHC16Q969W1 377 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 CENPOQ9BU64 300 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 C6orf62Q9GZU0 229 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-208ENST00000532560 PPIL3Q9H2H8 161 aaKnown RBP12.29□□□□□ -0.44
CPSF1-208ENST00000532560 ST3GAL6Q9Y274 331 aa12.29□□□□□ -0.44
CPSF1-208ENST00000532560 UBE2J1Q9Y385 318 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms