RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 A0A1W2PPR1 153 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 TMEM82A0PJX8 343 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 OOEPA6NGQ2 149 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 TMEM178BH3BS89 294 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 HPXP02790 462 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 DANCRP0C864 163 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 RAG2P55895 527 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 SRSF1Q07955 248 aaKnown RBP eCLIP17.61■□□□□ 0.41
VPS28-208ENST00000527797 GRK1Q15835 563 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 TEX36Q5VZQ5 186 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 C11orf71Q6IPW1 123 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 ZNF497Q6ZNH5 498 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 OVCH2Q7RTZ1 564 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 DTX2Q86UW9 622 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 ASCC1Q8N9N2 400 aaKnown RBP17.61■□□□□ 0.41
VPS28-208ENST00000527797 ANGPTL6Q8NI99 470 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 PPP1R35Q8TAP8 253 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 SPOCK3Q9BQ16 436 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 SLC25A21Q9BQT8 299 aaPredicted RBP17.61■□□□□ 0.41
VPS28-208ENST00000527797 RAB1BQ9H0U4 201 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 NECAP2Q9NVZ3 263 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 DCAF16Q9NXF7 216 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 ING3Q9NXR8 418 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 METRNQ9UJH8 293 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 ZNF222Q9UK12 451 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 FLVCR2Q9UPI3 526 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 ARPC1BO15143 372 aaKnown RBP17.61■□□□□ 0.41
VPS28-208ENST00000527797 ZNF205O95201 554 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 SOD3P08294 240 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 C17orf107Q6ZR85 190 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 UBTD1Q9HAC8 227 aa17.61■□□□□ 0.41
VPS28-208ENST00000527797 KIR2DS1A0A191URI9 304 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 LGALS8O00214 317 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 SDCBPO00560 298 aaPredicted RBP17.6■□□□□ 0.41
VPS28-208ENST00000527797 GSTT2P0CG29 244 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 KIR2DS4P43632 304 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 OR3A1P47881 315 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 KIR2DS1Q14954 304 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 TATDN3Q17R31 274 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 SLC35E4Q6ICL7 350 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 ZNF880Q6PDB4 577 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 C20orf204Q6ZNR8 217 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 CADM3Q8N126 398 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 GAPTQ8N292 157 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 DEFB108BQ8NET1 73 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 SNX22Q96L94 193 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 TRAF4Q9BUZ4 470 aaPredicted RBP17.6■□□□□ 0.41
VPS28-208ENST00000527797 RALYQ9UKM9 306 aaKnown RBP17.6■□□□□ 0.41
VPS28-208ENST00000527797 ICE1Q9Y2F5 2266 aa17.6■□□□□ 0.41
VPS28-208ENST00000527797 ADGRG4Q8IZF6 3080 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 CHD3Q12873 2000 aaKnown RBP17.59■□□□□ 0.41
VPS28-208ENST00000527797 PPIAL4EA0A075B759 164 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 TRAV38-1A0A0B4J264 116 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 TMEM30CPA0ZSE6 113 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 TRDCB7Z8K6 153 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 PPIAL4DF5H284 164 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 ZNF737O75373 536 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 PPIAL4FP0DN26 164 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 HFEQ30201 348 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 STUMQ69YW2 141 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 MOB1BQ7L9L4 216 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 OR13C8Q8NGS7 320 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 TERB2Q8NHR7 220 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 TRAPPC2LQ9UL33 140 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 MGAT4AQ9UM21 535 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 LAMP3Q9UQV4 416 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 PPIAL4AQ9Y536 164 aa17.59■□□□□ 0.41
VPS28-208ENST00000527797 PEX14O75381 377 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 OR5H8P0DN80 308 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 ZNF561Q8N587 486 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 CCDC107Q8WV48 283 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 SDSLQ96GA7 329 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 SHARPINQ9H0F6 387 aa17.58■□□□□ 0.41
VPS28-208ENST00000527797 ZNF462Q96JM2 2506 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 SPTBN1Q01082 2364 aaKnown RBP17.58■□□□□ 0.4
VPS28-208ENST00000527797 A0A0B4J293 547 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 FABP7O15540 132 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 RLN1P04808 185 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 OR6F1Q8NGZ6 308 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 ZNF665Q9H7R5 613 aa17.58■□□□□ 0.4
VPS28-208ENST00000527797 SMG1Q96Q15 3661 aaKnown RBP17.57■□□□□ 0.4
VPS28-208ENST00000527797 ROS1P08922 2347 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 MGST3O14880 152 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 GYPAP02724 150 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 RCC1P18754 421 aaPredicted RBP17.57■□□□□ 0.4
VPS28-208ENST00000527797 AESQ08117 197 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 KRBOX4Q5JUW0 171 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 ZNRF1Q8ND25 227 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 NEU4Q8WWR8 484 aaPredicted RBP17.57■□□□□ 0.4
VPS28-208ENST00000527797 COQ2Q96H96 371 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 MAB21L2Q9Y586 359 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 ALG5Q9Y673 324 aa17.57■□□□□ 0.4
VPS28-208ENST00000527797 K7N7A8 449 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 PFDN1O60925 122 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 SCTP09683 121 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 CTXN2P0C2S0 81 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 GLP1RP43220 463 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 MECP2P51608 486 aaKnown RBP17.56■□□□□ 0.4
VPS28-208ENST00000527797 PAX5Q02548 391 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 CARTPTQ16568 116 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 161.6 ms