RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ERP29P30040 261 aaKnown RBP11.28□□□□□ -0.6
CPSF1-201ENST00000526271 RPL23AP62750 156 aaKnown RBP11.28□□□□□ -0.6
CPSF1-201ENST00000526271 ZNF85Q03923 595 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 TPTE2P1Q5T6R2 138 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 HEPN1Q6WQI6 88 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 OSR2Q8N2R0 312 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 ACBD7Q8N6N7 88 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 CORO2AQ92828 525 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 RBMXL1Q96E39 390 aaKnown RBP11.28□□□□□ -0.6
CPSF1-201ENST00000526271 TMEM80Q96HE8 168 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 DUX3Q96PT4 197 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 P2RX4Q99571 388 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 TBX5Q99593 518 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 DIMT1Q9UNQ2 313 aaKnown RBP11.28□□□□□ -0.6
CPSF1-201ENST00000526271 TPRKBQ9Y3C4 175 aa11.28□□□□□ -0.6
CPSF1-201ENST00000526271 A0A087X0M5 115 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 A0A1B0GX30 115 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 BUB1B-PAK6H3BSN5 160 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 SIRPB1O00241 398 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 MGST3O14880 152 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 GABRR1P24046 479 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 CD69Q07108 199 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 ST3GAL4Q11206 333 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 HLA-DRB5Q30154 266 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 RNLSQ5VYX0 342 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 Q6P435 159 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 C8orf86Q6ZUL3 223 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 OR10H4Q8NGA5 316 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 PAK1IP1Q9NWT1 392 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-201ENST00000526271 ERVK13-1Q9NX77 482 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 LINC00527Q9UJ94 153 aa11.27□□□□□ -0.61
CPSF1-201ENST00000526271 UBE2J1Q9Y385 318 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-201ENST00000526271 LSM4Q9Y4Z0 139 aaKnown RBP11.27□□□□□ -0.61
CPSF1-201ENST00000526271 LOC107986453A0A1B0GWG9 222 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 DAPL1A0PJW8 107 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 PTGES3LE9PB15 166 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 SYT7O43581 403 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 SULT1C4O75897 302 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 DUS4LO95620 317 aaKnown RBP11.26□□□□□ -0.61
CPSF1-201ENST00000526271 OR2H2O95918 312 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 CDK1P06493 297 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 LIMS3P0CW19 117 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 LIMS4P0CW20 117 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 C21orf33P30042 268 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-201ENST00000526271 FUT6P51993 359 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 AESQ08117 197 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 GALEQ14376 348 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 KHDC1LQ5JSQ8 128 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 OR2W3Q7Z3T1 314 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 KCTD20Q7Z5Y7 419 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 LHFPL3Q86UP9 236 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 FAM58AQ8N1B3 248 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 OR4X2Q8NGF9 303 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 OR10AC1Q8NH08 325 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 RFT1Q96AA3 541 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 PPIL3Q9H2H8 161 aaKnown RBP11.26□□□□□ -0.61
CPSF1-201ENST00000526271 HMG20AQ9NP66 347 aa11.26□□□□□ -0.61
CPSF1-201ENST00000526271 EXOSC1Q9Y3B2 195 aaKnown RBP11.26□□□□□ -0.61
CPSF1-201ENST00000526271 A0A1W2PPI3 338 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 METTL15A6NJ78 407 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 PRKACAP17612 351 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 LMO1P25800 156 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 POU3F4P49335 361 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 ETV1P50549 477 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 C9orf152Q5JTZ5 239 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 AHSA2Q719I0 299 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 SYS1Q8N2H4 156 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 STX19Q8N4C7 294 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 C5orf56Q8N8D9 126 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 YIPF7Q8N8F6 280 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 SPACA5Q96QH8 159 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 MYCBPQ99417 103 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-201ENST00000526271 BLOC1S6Q9UL45 172 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 SLC7A11Q9UPY5 501 aa11.25□□□□□ -0.61
CPSF1-201ENST00000526271 ODAMA1E959 279 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 PSMB11A5LHX3 300 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 LEUTXA8MZ59 168 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 MRPS14O60783 128 aaKnown RBP11.24□□□□□ -0.61
CPSF1-201ENST00000526271 IGHV3-7P01780 117 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 NANOS3P60323 173 aaKnown RBP11.24□□□□□ -0.61
CPSF1-201ENST00000526271 GABARAPL2P60520 117 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 PDZK1IP1Q13113 114 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 IRF3Q14653 427 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 CDK5R1Q15078 307 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 LCNL1Q6ZST4 164 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 TRAPPC6BQ86SZ2 158 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 RTN4RL2Q86UN3 420 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 DNAAF1Q8NEP3 725 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 LEAP2Q969E1 77 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 BORCS8Q96FH0 119 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 MRPL48Q96GC5 212 aaKnown RBP11.24□□□□□ -0.61
CPSF1-201ENST00000526271 ALG8Q9BVK2 526 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 COMMD4Q9H0A8 199 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 TAS2R3Q9NYW6 316 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 ZNF581Q9P0T4 197 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 CLEC2DQ9UHP7 191 aa11.24□□□□□ -0.61
CPSF1-201ENST00000526271 SLC33A1O00400 549 aaPredicted RBP11.23□□□□□ -0.61
CPSF1-201ENST00000526271 RGS10O43665 173 aa11.23□□□□□ -0.61
CPSF1-201ENST00000526271 KDM4BO94953 1096 aa11.23□□□□□ -0.61
CPSF1-201ENST00000526271 KRT8P05787 483 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms