RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NDUFA2O43678 99 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 SNCAP37840 140 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 ID4P47928 161 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 FOXG1P55316 489 aaPredicted RBP18.2■□□□□ 0.5
VPS28-205ENST00000526204 UCP2P55851 309 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 MCEMP1Q8IX19 187 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 SECTM1Q8WVN6 248 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 ATP23Q9Y6H3 246 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 NKX2-6A6NCS4 301 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 ZNF503-AS2A6NEH8 195 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 CD300LBA8K4G0 201 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 TUSC2O75896 110 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 SCTP09683 121 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 NHLH2Q02577 135 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 PEA15Q15121 130 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 OR10Z1Q8NGY1 313 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 NEK7Q8TDX7 302 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 BOD1Q96IK1 185 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 CRIM1Q9NZV1 1036 aa18.2■□□□□ 0.5
VPS28-205ENST00000526204 NGFP01138 241 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 NKX2-1P43699 371 aaPredicted RBP18.19■□□□□ 0.5
VPS28-205ENST00000526204 CAMLGP49069 296 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 MIDNQ504T8 468 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 OR2C3Q8N628 320 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 USB1Q9BQ65 265 aaKnown RBP18.19■□□□□ 0.5
VPS28-205ENST00000526204 PLA2G3Q9NZ20 509 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 MPC1Q9Y5U8 109 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 C9JQL5 133 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 EWSR1Q01844 656 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS28-205ENST00000526204 ZNF616Q08AN1 781 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 ZNF818PQ6ZRF7 136 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 LINC00696Q6ZRV3 163 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 OR5P3Q8WZ94 311 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 IP6K3Q96PC2 410 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 HS3ST6Q96QI5 342 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 C11orf1Q9H5F2 150 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 ZNF552Q9H707 407 aaPredicted RBP18.19■□□□□ 0.5
VPS28-205ENST00000526204 CACFD1Q9UGQ2 172 aa18.19■□□□□ 0.5
VPS28-205ENST00000526204 KLF13Q9Y2Y9 288 aaPredicted RBP18.19■□□□□ 0.5
VPS28-205ENST00000526204 SLC22A20A6NK97 555 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 OR5B21A6NL26 309 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 ANKRD30BLA7E2S9 258 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 ZNF266Q14584 549 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 ZNF573Q86YE8 665 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 CMTM1Q8IZ96 169 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 SELENOHQ8IZQ5 122 aaKnown RBP18.18■□□□□ 0.5
VPS28-205ENST00000526204 GAPTQ8N292 157 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 SNIP1Q8TAD8 396 aaKnown RBP18.18■□□□□ 0.5
VPS28-205ENST00000526204 C19orf12Q9NSK7 152 aa18.18■□□□□ 0.5
VPS28-205ENST00000526204 A0A1W2PNU3 283 aaPredicted RBP18.17■□□□□ 0.5
VPS28-205ENST00000526204 LNP1A1A4G5 178 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 CLEC18AA5D8T8 446 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 APLNRP35414 380 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 HERPUD1Q15011 391 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 CLEC18CQ8NCF0 446 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 AKR1E2Q96JD6 320 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 SLC25A31Q9H0C2 315 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 PARP12Q9H0J9 701 aaKnown RBP18.17■□□□□ 0.5
VPS28-205ENST00000526204 TRBV6-6A0A0A6YYG2 114 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 PIGBOS1A0A0B4J2F0 54 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 KLRC4-KLRK1H3BQV0 150 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 NME2P1O60361 137 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 SLC34A2O95436 690 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 PRH1P02810 166 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 SP1P08047 785 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 PRKACAP17612 351 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 NOVA1P51513 510 aaKnown RBP18.17■□□□□ 0.5
VPS28-205ENST00000526204 PLEKHF2Q9H8W4 249 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 ZDBF2Q9HCK1 2354 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 DOCK10Q96BY6 2186 aa18.17■□□□□ 0.5
VPS28-205ENST00000526204 SYNGR1O43759 233 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 NFYBP25208 207 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 UCP1P25874 307 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 GNG3P63215 75 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 TSC22D1Q15714 1073 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 NUFIP2Q7Z417 695 aaKnown RBP18.16■□□□□ 0.5
VPS28-205ENST00000526204 KDF1Q8NAX2 398 aaPredicted RBP18.16■□□□□ 0.5
VPS28-205ENST00000526204 IL22RA2Q969J5 263 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 SMCO4Q9NRQ5 59 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 IL36RNQ9UBH0 155 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 ZNHIT1O43257 154 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 VDAC1P21796 283 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 S100GP29377 79 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 PPT1P50897 306 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 IL24Q13007 206 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 CLN3Q13286 438 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 GUK1Q16774 197 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 SUMF2Q8NBJ7 301 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 HSD17B11Q8NBQ5 300 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 SHANK1Q9Y566 2161 aa18.16■□□□□ 0.5
VPS28-205ENST00000526204 ARID1AO14497 2285 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 HSPB6O14558 160 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 MMP9P14780 707 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 MEOX1P50221 254 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 LFNGQ8NES3 379 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 OR5D13Q8NGL4 314 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 NANOS1Q8WY41 292 aaKnown RBP18.15■□□□□ 0.5
VPS28-205ENST00000526204 FER1L6-AS2Q96M78 137 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 PBDC1Q9BVG4 233 aa18.15■□□□□ 0.5
VPS28-205ENST00000526204 SH3BGRL3Q9H299 93 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms