RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 GJE1A6NN92 205 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ZNF716A6NP11 495 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 PPIAL4DF5H284 164 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 CXCR6O00574 342 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ZNF208O43345 1280 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 SS18L1O75177 396 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 SERPINB7O75635 380 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 CTAG2O75638 210 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TNFSF13O75888 250 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 RCBTB2O95199 551 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 LGI1O95970 557 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 LALBAP00709 142 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 CA1P00915 261 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 NCK1P16333 377 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ELK1P19419 428 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 GGT1P19440 569 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 FUT3P21217 361 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 PTNP21246 168 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ME2P23368 584 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 KDELR2P33947 212 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 POLR2HP52434 150 aaKnown RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 RIPPLY3P57055 190 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 NCALDP61601 193 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 COPZ1P61923 177 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TLE4Q04727 773 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TFF3Q07654 80 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 BNIP2Q12982 314 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 HERPUD1Q15011 391 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 GUSBP1Q15486 140 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 OR1Q1Q15612 314 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TSC22D1Q15714 1073 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 NRF1Q16656 503 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 DUSP7Q16829 419 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TMEM176BQ3YBM2 270 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 SLC36A3Q495N2 470 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 OTPQ5XKR4 325 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 HBMQ6B0K9 141 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 XKRXQ6PP77 449 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TMPPEQ6ZT21 453 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 UTS2BQ765I0 119 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 RBM45Q8IUH3 476 aaKnown RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 CLVS1Q8IUQ0 354 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 DEFB107AQ8IZN7 70 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 OR52E4Q8NGH9 312 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 OR13C2Q8NGS9 318 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ABHD3Q8WU67 409 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 SPRYD4Q8WW59 207 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 CPNE4Q96A23 557 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 CYYR1Q96J86 154 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ZFP3Q96NJ6 502 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ZNF607Q96SK3 696 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 MCHR1Q99705 422 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 CITED1Q99966 193 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 KCTD14Q9BQ13 255 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 SFXN3Q9BWM7 321 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 UCK2Q9BZX2 261 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ARMC7Q9H6L4 198 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 RNF122Q9H9V4 155 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 VCX3AQ9NNX9 186 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TREM1Q9NP99 234 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 KLHL28Q9NXS3 571 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ANAPC11Q9NYG5 84 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 TREM2Q9NZC2 230 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 ADA2Q9NZK5 511 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 WARS2Q9UGM6 360 aaKnown RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 MCTS1Q9ULC4 181 aaKnown RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 AP3M1Q9Y2T2 418 aa2.68□□□□□ -1.98
CD44-219ENST00000525685 NUP214P35658 2090 aaPredicted RBP2.68□□□□□ -1.98
CD44-219ENST00000525685 NOTCH2Q04721 2471 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 FLNBO75369 2602 aaKnown RBP2.67□□□□□ -1.98
CD44-219ENST00000525685 ZFYVE26Q68DK2 2539 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 IGHV1OR15-1A0A075B7D0 117 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 A0A087WUJ7 227 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 IGHV2-70DA0A0C4DH43 119 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 A0A0J9YXY3 114 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 CENPBD1B2RD01 187 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 EEF1E1-BLOC1S5C9J1V9 151 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 FTCDNL1E5RQL4 147 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 G3V4G9 280 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 H0Y8G0 127 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 BET1O15155 118 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 EEF1E1O43324 174 aaKnown RBP2.67□□□□□ -1.98
CD44-219ENST00000525685 CHP2O43745 196 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 MGRN1O60291 552 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 NPIPB7O75200 414 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 AHSA1O95433 338 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 CRYZL1O95825 349 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 SERPINA1P01009 418 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 BGLAPP02818 100 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 CRHP06850 196 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 FREM3P0C091 2139 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 HSMCR30P0CW71 290 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 MGMTP16455 207 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 TCN1P20061 433 aaPredicted RBP2.67□□□□□ -1.98
CD44-219ENST00000525685 ATP6V1B2P21281 511 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 CXCR1P25024 350 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 HTR1EP28566 365 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 CD1BP29016 333 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 GRPRP30550 384 aa2.67□□□□□ -1.98
CD44-219ENST00000525685 AGTR1P30556 359 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms