RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ELF5Q9UKW6 265 aaPredicted RBP12.7□□□□□ -0.38
LSM1-203ENST00000520755 METTL21EPA6NDL7 271 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 KIAA1324LA8MWY0 1029 aaPredicted RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 FAM25AB3EWG3 89 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 FAM25CB3EWG5 89 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 FAM25GB3EWG6 89 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 CHRM2P08172 466 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 HIST1H1DP16402 221 aaKnown RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 FUT3P21217 361 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 TNFSF8P32971 234 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 NPY4RP50391 375 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 PAN3Q58A45 887 aaKnown RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 ATAD3CQ5T2N8 411 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 Q6ZPA2 131 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 GLCCI1Q86VQ1 547 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 BPIFB2Q8N4F0 458 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 ASCC1Q8N9N2 400 aaKnown RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 TMEM185AQ8NFB2 350 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 PLPPR1Q8TBJ4 325 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 MED30Q96HR3 178 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 DPCDQ9BVM2 203 aaPredicted RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 ZMAT3Q9HA38 289 aaKnown RBP12.69□□□□□ -0.38
LSM1-203ENST00000520755 EXTL2Q9UBQ6 330 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 GLS2Q9UI32 602 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 HSF4Q9ULV5 492 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 PEX16Q9Y5Y5 336 aa12.69□□□□□ -0.38
LSM1-203ENST00000520755 A0A0A6YYH2 397 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 TRAV20A0A0B4J274 112 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 A6NJ64 397 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 A8MXK9 166 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 K7N7A8 449 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 XRCC3O43542 346 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 TK1P04183 234 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 PTHLHP12272 177 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 GNB3P16520 340 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 DVL1P1P54792 670 aaPredicted RBP12.68□□□□□ -0.38
LSM1-203ENST00000520755 TAS2R20P59543 309 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 ATXN7L3Q14CW9 347 aaPredicted RBP12.68□□□□□ -0.38
LSM1-203ENST00000520755 FAM189A2Q15884 450 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 ZNF260Q3ZCT1 412 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 LRRC10Q5BKY1 277 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 CCDC190Q86UF4 302 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 OR8H2Q8N162 312 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 GCDHQ92947 438 aaPredicted RBP12.68□□□□□ -0.38
LSM1-203ENST00000520755 TMEM186Q96B77 213 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 RAB3CQ96E17 227 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 COQ2Q96H96 371 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 SPACA1Q9HBV2 294 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.68□□□□□ -0.38
LSM1-203ENST00000520755 HIF1ANQ9NWT6 349 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 SLC25A10Q9UBX3 287 aaPredicted RBP12.68□□□□□ -0.38
LSM1-203ENST00000520755 KCNS2Q9ULS6 477 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 V9GYH0 126 aa12.68□□□□□ -0.38
LSM1-203ENST00000520755 TRAV18A0A075B6X5 111 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 UBE2QL1A1L167 161 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 TMEM235A6NFC5 223 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 SCGNO76038 276 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 CSN2P05814 226 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 NDUFB7P17568 137 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 TMEM69Q5SWH9 247 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 RSBN1Q5VWQ0 802 aaPredicted RBP12.67□□□□□ -0.38
LSM1-203ENST00000520755 Q6ZTK2 550 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 S100A16Q96FQ6 103 aaKnown RBP12.67□□□□□ -0.38
LSM1-203ENST00000520755 DIRAS2Q96HU8 199 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 SNX22Q96L94 193 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 NEDD4LQ96PU5 975 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 SOSTQ9BQB4 213 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 HDHD3Q9BSH5 251 aaPredicted RBP12.67□□□□□ -0.38
LSM1-203ENST00000520755 FAAP24Q9BTP7 215 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 MMP26Q9NRE1 261 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 AK3Q9UIJ7 227 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 ADAM30Q9UKF2 790 aa12.67□□□□□ -0.38
LSM1-203ENST00000520755 LOC105371242A0A075B767 164 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 A8MV72 311 aaPredicted RBP12.66□□□□□ -0.38
LSM1-203ENST00000520755 HLA-DQB1P01920 261 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 ETV6P41212 452 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 MNDAP41218 407 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 PAX5Q02548 391 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 GRK1Q15835 563 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 ZNF79Q15937 498 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 DCAF12L2Q5VW00 463 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 BTN2A1Q7KYR7 527 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 TCF23Q7RTU1 214 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 GAPTQ8N292 157 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 MFSD4AQ8N468 514 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 TPRX1Q8N7U7 411 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 H1FXQ92522 213 aaKnown RBP12.66□□□□□ -0.38
LSM1-203ENST00000520755 FAM234AQ9H0X4 552 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 AUNIPQ9H7T9 357 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 AKIP1Q9NQ31 210 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 DIABLOQ9NR28 239 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 PLEKHJ1Q9NW61 149 aa12.66□□□□□ -0.38
LSM1-203ENST00000520755 CSPG4Q6UVK1 2322 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 A0A0G2JMP0 313 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 A0A0X1KG70 313 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 C22orf46C9J442 243 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 MCRIP1C9JLW8 97 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 MGST3O14880 152 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 SSX5O60225 188 aa12.65□□□□□ -0.38
LSM1-203ENST00000520755 GLAP06280 429 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms