RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 GADD45AP24522 165 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ERVFRD-1P60508 538 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 QRFPP83859 136 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 AESQ08117 197 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 RBM39Q14498 530 aaKnown RBP11.71□□□□□ -0.53
NUP54-216ENST00000514901 ZNF273Q14593 569 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ATAD3CQ5T2N8 411 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 USP43Q70EL4 1123 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ZNF565Q8N9K5 539 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ZNF418Q8TF45 676 aaPredicted RBP11.71□□□□□ -0.53
NUP54-216ENST00000514901 LHX4Q969G2 390 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 ZNF714Q96N38 554 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 CHCHD6Q9BRQ6 235 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 SUCNR1Q9BXA5 334 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 TMEM59Q9BXS4 323 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 OCEL1Q9H607 264 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 HEXA-AS1Q9H8Q6 139 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 TAS2R3Q9NYW6 316 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 OR6C3Q9NZP0 311 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 FBLN5Q9UBX5 448 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 STEAP1Q9UHE8 339 aa11.71□□□□□ -0.53
NUP54-216ENST00000514901 IGHV1-69DA0A0B4J2H0 117 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 LOC100506127A0A0U1RQW1 187 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 IFITM5A6NNB3 132 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 TMEM14DPA8MWL7 114 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 MCRIP1C9JLW8 97 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 IGHV1-69P01742 117 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 FUT3P21217 361 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 DLX6P56179 175 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 RPS27AP62979 156 aaKnown RBP11.7□□□□□ -0.54
NUP54-216ENST00000514901 P2RY14Q15391 338 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 FAM189A2Q15884 450 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 SLC35E4Q6ICL7 350 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 TRAPPC6BQ86SZ2 158 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 C11orf42Q8N5U0 333 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 TPRX1Q8N7U7 411 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 TNFRSF14Q92956 283 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 FAM46BQ96A09 425 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 FAM3DQ96BQ1 224 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 YIPF6Q96EC8 236 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 COQ2Q96H96 371 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 URM1Q9BTM9 101 aaKnown RBP11.7□□□□□ -0.54
NUP54-216ENST00000514901 TM2D1Q9BX74 207 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 MRPS26Q9BYN8 205 aaKnown RBP11.7□□□□□ -0.54
NUP54-216ENST00000514901 GAL3ST2Q9H3Q3 398 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 SIRT7Q9NRC8 400 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 RCC2Q9P258 522 aaKnown RBP11.7□□□□□ -0.54
NUP54-216ENST00000514901 ZNF69Q9UC07 566 aa11.7□□□□□ -0.54
NUP54-216ENST00000514901 SHISA3A0PJX4 238 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 NOTOA8MTQ0 251 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 AIPO00170 330 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 HSPB6O14558 160 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 TCF21O43680 179 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 AIREO43918 545 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 CA11O75493 328 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 CCL3L1P16619 93 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 GLIPR1P48060 266 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 UBE2E1P51965 193 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 ATXN7L3Q14CW9 347 aaPredicted RBP11.69□□□□□ -0.54
NUP54-216ENST00000514901 C2orf76Q3KRA6 126 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 RAB12Q6IQ22 244 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 RBMS3Q6XE24 437 aaKnown RBP11.69□□□□□ -0.54
NUP54-216ENST00000514901 PRIMA1Q86XR5 153 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 OR51D1Q8NGF3 324 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 NEK7Q8TDX7 302 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 NEDD4LQ96PU5 975 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 JMJD8Q96S16 334 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 RAB22AQ9UL26 194 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 PEX16Q9Y5Y5 336 aa11.69□□□□□ -0.54
NUP54-216ENST00000514901 IGHV3OR16-10A0A075B7F0 116 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 MEIKINA0A087WXM9 373 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 TMEM30CPA0ZSE6 113 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 PDCD6O75340 191 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 SMIM18P0DKX4 95 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 GZMHP20718 246 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 SDC2P34741 201 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 OR10A3P58181 314 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 UNC119Q13432 240 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 TUSC1Q2TAM9 212 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 KRTAP21-3Q3LHN1 58 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 HES5Q5TA89 166 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 RSBN1Q5VWQ0 802 aaPredicted RBP11.68□□□□□ -0.54
NUP54-216ENST00000514901 OR10K2Q6IF99 312 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 TCF23Q7RTU1 214 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 OR13F1Q8NGS4 319 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 OR13D1Q8NGV5 346 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 CENPOQ9BU64 300 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 KIF25Q9UIL4 384 aa11.68□□□□□ -0.54
NUP54-216ENST00000514901 ZNF729A6NN14 1252 aaPredicted RBP11.67□□□□□ -0.54
NUP54-216ENST00000514901 RNASEK-C17orf49H0YIS7 233 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 LDLRAD4O15165 306 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 TMEM127O75204 238 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 IGHV1-8P0DP01 117 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 CLDN12P56749 244 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 SIGIRRQ6IA17 410 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 OR52W1Q6IF63 320 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 HEPN1Q6WQI6 88 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 BRD3OSQ6XYD6 125 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 FAM89BQ8N5H3 189 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 PLPPR1Q8TBJ4 325 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms