RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PPP1R14DQ9NXH3 145 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 FREM3P0C091 2139 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 TRAV20A0A0B4J274 112 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 CHRNA7P36544 502 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 CLPPQ16740 277 aaPredicted RBP11.1□□□□□ -0.63
USP53-209ENST00000514665 MOB1BQ7L9L4 216 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 C1orf210Q8IVY1 113 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 SLC25A45Q8N413 288 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 TMEM18Q96B42 140 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 GPR35Q9HC97 309 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 SLC7A10Q9NS82 523 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 HEATR5BQ9P2D3 2071 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 COL6A6A6NMZ7 2263 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 RBFOX3A6NFN3 312 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 SYNGR2O43760 224 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 CD200P41217 278 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 COL13A1Q5TAT6 717 aaPredicted RBP11.1□□□□□ -0.63
USP53-209ENST00000514665 OR2A2Q6IF42 318 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 HOGA1Q86XE5 327 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 SKA3Q8IX90 412 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 LRRC29Q8WV35 223 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 TMEM38BQ9NVV0 291 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 MKRN2OSH3BPM6 223 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 BCL3P20749 454 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 TMEM255AQ5JRV8 349 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 ETV3LQ6ZN32 361 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 BOD1Q96IK1 185 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 ZNF488Q96MN9 340 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 LRFN3Q9BTN0 628 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 CADP27708 2225 aa11.1□□□□□ -0.63
USP53-209ENST00000514665 CHD5Q8TDI0 1954 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 HPP00738 406 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 CST2P09228 141 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 CHRNB4P30926 498 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 MPV17LQ2QL34 196 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 BTNL3Q6UXE8 466 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 M1APQ8TC57 530 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 ZNRF4Q8WWF5 429 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 MPC1Q9Y5U8 109 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 TTC28Q96AY4 2481 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 PCNX1Q96RV3 2341 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 KLK10O43240 276 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 KLF4O43474 513 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 HIKESHIQ53FT3 197 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 STUMQ69YW2 141 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 UNQ9370/PRO34162Q6UXP9 181 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 OR5AC2Q9NZP5 309 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 RGPD4Q7Z3J3 1758 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 RBBP6Q7Z6E9 1792 aaKnown RBP11.09□□□□□ -0.63
USP53-209ENST00000514665 TP53BP1Q12888 1972 aaPredicted RBP11.09□□□□□ -0.63
USP53-209ENST00000514665 TRGV8A0A0C4DH27 118 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 C1QL1O75973 258 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 EGR4Q05215 589 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 COL19A1Q14993 1142 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 TMEM241Q24JQ0 296 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 ZNF260Q3ZCT1 412 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 APOBEC4Q8WW27 367 aaKnown RBP11.09□□□□□ -0.63
USP53-209ENST00000514665 ADIPOR1Q96A54 375 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 MRGPRFQ96AM1 343 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 FAM210BQ96KR6 192 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 ZNF835Q9Y2P0 537 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 RALGAPA1Q6GYQ0 2036 aa11.09□□□□□ -0.63
USP53-209ENST00000514665 TRDCB7Z8K6 153 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 MS4A18H0YCH9 400 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 TGOLN2O43493 480 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 ERVFC1-1P60608 527 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 MS4A18Q3C1V0 323 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 NCMAPQ5T1S8 102 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 C19orf48Q6RUI8 117 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 WNT2BQ93097 391 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 PTX4Q96A99 478 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 KCNK17Q96T54 332 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 ZNF737O75373 536 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 NHLH2Q02577 135 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 HES3Q5TGS1 186 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 TRBV5-7A0A0A0MS05 114 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 TOX4O94842 621 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 ADRA2AP08913 450 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 FSTP19883 344 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 SOX8P57073 446 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 EIF3IQ13347 325 aaKnown RBP11.08□□□□□ -0.64
USP53-209ENST00000514665 GUCA2BQ16661 112 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 AARDQ4LEZ3 155 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 ACSM6Q6P461 480 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 DEFB124Q8NES8 71 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 POMT1Q9Y6A1 747 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 DOCK8Q8NF50 2099 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 CRYBA1P05813 215 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 EWSR1Q01844 656 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP53-209ENST00000514665 ZP4Q12836 540 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 IL24Q13007 206 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 CEBPEQ15744 281 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 STPG2Q8N412 459 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 OR10G4Q8NGN3 311 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 OR10G9Q8NGN4 311 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 OR10G7Q8NGN6 311 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 USB1Q9BQ65 265 aaKnown RBP11.08□□□□□ -0.64
USP53-209ENST00000514665 SLX1AQ9BQ83 275 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 CLCF1Q9UBD9 225 aa11.08□□□□□ -0.64
USP53-209ENST00000514665 WNK3Q9BYP7 1800 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms