RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 Q96M66 194 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 TM2D1Q9BX74 207 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 CTSZQ9UBR2 303 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 POLR3KQ9Y2Y1 108 aaPredicted RBP16.7■□□□□ 0.26
USP53-208ENST00000514305 CEPT1Q9Y6K0 416 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 TRBV23-1A0A0A0MS06 115 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 SLC2A2P11168 524 aaPredicted RBP16.69■□□□□ 0.26
USP53-208ENST00000514305 AMY2BP19961 511 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 FUT3P21217 361 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 QRFPP83859 136 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 GRK1Q15835 563 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 PAN3Q58A45 887 aaKnown RBP16.69■□□□□ 0.26
USP53-208ENST00000514305 Q6P435 159 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 NR2C2APQ86WQ0 139 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 IL36RNQ9UBH0 155 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 SPATA2Q9UM82 520 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 ANK2Q01484 3957 aa16.69■□□□□ 0.26
USP53-208ENST00000514305 TMEM272A0A1B0GTI8 110 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 A0A1W2PP11 408 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 ENSAO43768 121 aaKnown RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 CSN2P05814 226 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 ZNF182P17025 639 aaPredicted RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 ERP29P30040 261 aaKnown RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 TGFBR1P36897 503 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 CEBPDP49716 269 aaPredicted RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 LCN2P80188 198 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 OR10K2Q6IF99 312 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 RAB12Q6IQ22 244 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 NEK7Q8TDX7 302 aa16.68■□□□□ 0.26
USP53-208ENST00000514305 H1FXQ92522 213 aaKnown RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 DGCR14Q96DF8 476 aaKnown RBP16.68■□□□□ 0.26
USP53-208ENST00000514305 H3BMQ9 156 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 SLC33A1O00400 549 aaPredicted RBP16.67■□□□□ 0.26
USP53-208ENST00000514305 PDCD6O75340 191 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 ZNF737O75373 536 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 UNC119Q13432 240 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 BTN2A1Q7KYR7 527 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 NDNFQ8TB73 568 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 ZNF418Q8TF45 676 aaPredicted RBP16.67■□□□□ 0.26
USP53-208ENST00000514305 RAB40AQ8WXH6 277 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 CMTM3Q96MX0 182 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 DPCDQ9BVM2 203 aaPredicted RBP16.67■□□□□ 0.26
USP53-208ENST00000514305 LPAR5Q9H1C0 372 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 BATF3Q9NR55 127 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 PEX16Q9Y5Y5 336 aa16.67■□□□□ 0.26
USP53-208ENST00000514305 A0A0G2JMP0 313 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 A0A0X1KG70 313 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 hCG_1809904A0A1W2PP81 198 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 A0A1W2PPE2 198 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 A0A1W2PR64 198 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 A0A1W2PRV1 198 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 LDLRAD4O15165 306 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 CA11O75493 328 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 BLVRBP30043 206 aaPredicted RBP16.66■□□□□ 0.26
USP53-208ENST00000514305 EDDM3BP56851 147 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 MEF2CQ06413 473 aaPredicted RBP16.66■□□□□ 0.26
USP53-208ENST00000514305 C17orf107Q6ZR85 190 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 CMTM4Q8IZR5 234 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 FAM89BQ8N5H3 189 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 SUMF2Q8NBJ7 301 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 OR4M2Q8NGB6 313 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 ZFAND2BQ8WV99 257 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 DCTN5Q9BTE1 182 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 ZFAND3Q9H8U3 227 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 DIABLOQ9NR28 239 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 PLEKHJ1Q9NW61 149 aa16.66■□□□□ 0.26
USP53-208ENST00000514305 A0A0A6YYH2 397 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 A0A1W2PQ09 198 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 hADV38S2A0JD32 116 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 A6NJ64 397 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 J3QLI3 93 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 VEGFCP49767 419 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 SEC61A1P61619 476 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 RPL31P62899 125 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 MRPS15P82914 257 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 PDCD1Q15116 288 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 DCAF12L2Q5VW00 463 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 Q6ZTK2 550 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 LGALS14Q8TCE9 139 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 NUDT16L1Q9BRJ7 211 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 CHST6Q9GZX3 395 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 ATG5Q9H1Y0 275 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 NCOR1P1Q9H4R4 102 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 CCDC59Q9P031 241 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 RCC2Q9P258 522 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 RPUSD1Q9UJJ7 312 aaKnown RBP16.65■□□□□ 0.26
USP53-208ENST00000514305 HSF4Q9ULV5 492 aa16.65■□□□□ 0.26
USP53-208ENST00000514305 TRAV24A0A0B4J272 114 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 TMEM82A0PJX8 343 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 PSPNO60542 156 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 VENTXO95231 258 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 PPIAL4GP0DN37 164 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 OR3A1P47881 315 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 SPCS2Q15005 226 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 KRBOX4Q5JUW0 171 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 C12orf54Q6X4T0 127 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 OR4S1Q8NGB4 309 aa16.64■□□□□ 0.25
USP53-208ENST00000514305 S100A16Q96FQ6 103 aaKnown RBP16.64■□□□□ 0.25
USP53-208ENST00000514305 PPA2Q9H2U2 334 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms