RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DANCRP0C864 163 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TCN2P20062 427 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 AADACP22760 399 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PLCXD3Q63HM9 321 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 LGI3Q8N145 548 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SECTM1Q8WVN6 248 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 AKR1E2Q96JD6 320 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PFDN5Q99471 154 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FAM212BQ9NTI7 297 aaPredicted RBP13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 P4HTMQ9NXG6 502 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CBY1Q9Y3M2 126 aa13.86□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZNF816-ZNF321PA0A0X1KG74 233 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 DUSP1P28562 367 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SNCAP37840 140 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 P2RY1P47900 373 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 NPBWR2P48146 333 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TAS2R60P59551 318 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MALLQ13021 153 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 GPR157Q5UAW9 335 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TMEM211Q6ICI0 200 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ETV3LQ6ZN32 361 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CPEB3Q8NE35 698 aaKnown RBP13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SPSB4Q96A44 273 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ZNF845Q96IR2 970 aaPredicted RBP13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TP53RKQ96S44 253 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FOXJ2Q9P0K8 574 aa13.85□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PINLYPA6NC86 204 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SLC31A2O15432 143 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PCBD1P61457 104 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 IL13RA2Q14627 380 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PEA15Q15121 130 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 MIDNQ504T8 468 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CDCP2Q5VXM1 449 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SSX9Q7RTT3 188 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 BATF2Q8N1L9 274 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OR4D5Q8NGN0 318 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ABHD3Q8WU67 409 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 C1QTNF5Q9BXJ0 243 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 OPA3Q9H6K4 179 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 ANKRD11Q6UB99 2663 aaPredicted RBP13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PHF1O43189 567 aaPredicted RBP13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 NME2P1O60361 137 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 CYTIPO60759 359 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TRAPPC6AO75865 159 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 JMJD7P0C870 316 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FUT3P21217 361 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 LMO1P25800 156 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 PMELP40967 661 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 NHLH2Q02577 135 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 FBXW12Q6X9E4 464 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 SYT3Q9BQG1 590 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 C11orf1Q9H5F2 150 aa13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 RCL1Q9Y2P8 373 aaKnown RBP13.84□□□□□ -0.19
MSH5-SAPCD1-208ENST00000498473 TSPAN15O95858 294 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CEACAM1P13688 526 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 OTX2P32243 289 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FHITP49789 147 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FOXC1Q12948 553 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ALKBH2Q6NS38 261 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C5orf24Q7Z6I8 188 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SLC35G3Q8N808 338 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ZNF611Q8N823 705 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 Q8NFD4 153 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FGF23Q9GZV9 251 aaPredicted RBP13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SH3BGRL3Q9H299 93 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RNF122Q9H9V4 155 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PLSCR2Q9NRY7 297 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 BORCS7-ASMTA0A0B4J1R7 106 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 A0A1B0GV90 55 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ST8SIA3O43173 380 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PPYP01298 95 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GLP1RP43220 463 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GFRA1P56159 465 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SSX2Q16385 188 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 COLCA1Q6ZS62 124 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SLC25A26Q70HW3 274 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TECTBQ96PL2 329 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PRDM14Q9GZV8 571 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ZNF442Q9H7R0 627 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CRIM1Q9NZV1 1036 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 METTL1Q9UBP6 276 aaKnown RBP13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 KPTNQ9Y664 436 aa13.83□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 NBEAQ8NFP9 2946 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 DOCK10Q96BY6 2186 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C9orf172C9J069 976 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C1QL1O75973 258 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 OR7C1O76099 320 aaPredicted RBP13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IGHEP01854 428 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PPT1P50897 306 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ACER2Q5QJU3 275 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CCDC71LQ8N9Z2 235 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 EGLN1Q9GZT9 426 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 MRPS18CQ9Y3D5 142 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMED3Q9Y3Q3 217 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SMG1Q96Q15 3661 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 MPPED1O15442 326 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TNFSF15O95150 251 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IGHV3-9P01782 118 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HERV-K104P61576 105 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GUK1Q16774 197 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms