RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DYNC2LI1Q8TCX1 351 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 PTX4Q96A99 478 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 SLC25A38Q96DW6 304 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 COQ2Q96H96 371 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 ARHGAP5-AS1Q96IT6 56 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 SULT4A1Q9BR01 284 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 DCUN1D5Q9BTE7 237 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 FAAP24Q9BTP7 215 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 MRI1Q9BV20 369 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 PLEKHJ1Q9NW61 149 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 RHBDL2Q9NX52 303 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 RCC2Q9P258 522 aaKnown RBP9.83□□□□□ -0.84
CUX1-210ENST00000497815 KIF25Q9UIL4 384 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 SPATA2Q9UM82 520 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 INSIG2Q9Y5U4 225 aa9.83□□□□□ -0.84
CUX1-210ENST00000497815 MEIKINA0A087WXM9 373 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 TRBV23-1A0A0A0MS06 115 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 TRAV39A0A0B4J263 110 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 A0A0G2JMP0 313 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 A0A0X1KG70 313 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 H3BUI4 141 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 TMEM127O75204 238 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 LIPFP07098 398 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 SCAND1P57086 179 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 ARF6P62330 175 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 PAX2Q02962 417 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 FOXB2Q5VYV0 432 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 TMEM200BQ69YZ2 307 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 TRAPPC6BQ86SZ2 158 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 DTX3Q8N9I9 347 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 LY6G5BQ8NDX9 201 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 OR4M2Q8NGB6 313 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 OR10R2Q8NGX6 335 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 CCDC107Q8WV48 283 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 AP3S1Q92572 193 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 PHF21AQ96BD5 680 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 KCTD12Q96CX2 325 aaKnown RBP9.82□□□□□ -0.84
CUX1-210ENST00000497815 RAB3CQ96E17 227 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 PECRQ9BY49 303 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 ETAA1Q9NY74 926 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 PLA2G2EQ9NZK7 142 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 CCDC59Q9P031 241 aaKnown RBP9.82□□□□□ -0.84
CUX1-210ENST00000497815 NDUFA13Q9P0J0 144 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 KCNS2Q9ULS6 477 aa9.82□□□□□ -0.84
CUX1-210ENST00000497815 POLR3KQ9Y2Y1 108 aaPredicted RBP9.82□□□□□ -0.84
CUX1-210ENST00000497815 KIR2DS1A0A191URI9 304 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 hADV38S2A0JD32 116 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 ODAMA1E959 279 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 FUOMA2VDF0 154 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 FOXI3A8MTJ6 420 aaPredicted RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 ZNF701M0R085 212 aaPredicted RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 HPGDSO60760 199 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 CSN2P05814 226 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 GNB3P16520 340 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 CCL3L1P16619 93 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 ERP29P30040 261 aaKnown RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 KCNJ3P48549 501 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 TMEM50BP56557 158 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 ZNF273Q14593 569 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 FAM189A2Q15884 450 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 PLAC9Q5JTB6 97 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 UBE2NLQ5JXB2 153 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 RSBN1Q5VWQ0 802 aaPredicted RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 OLFML2AQ68BL7 652 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 MZT2AQ6P582 158 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 Q6ZTK2 550 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 IZUMO1Q8IYV9 350 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 CMTM4Q8IZR5 234 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 C8orf46Q8TAG6 207 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 ACOT12Q8WYK0 555 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 DACT3Q96B18 629 aaPredicted RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 DGCR14Q96DF8 476 aaKnown RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 POM121Q96HA1 1249 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 C7orf69Q9H7B7 122 aa9.81□□□□□ -0.84
CUX1-210ENST00000497815 ZMAT3Q9HA38 289 aaKnown RBP9.81□□□□□ -0.84
CUX1-210ENST00000497815 FLNAP21333 2647 aaKnown RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 TRGV10A0A0A0MS01 117 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 TMEM30CPA0ZSE6 113 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 A8MV72 311 aaPredicted RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 RAB27BO00194 218 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 RGS5O15539 181 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 GLAP06280 429 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 EIF4EP06730 217 aaKnown RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 GATA3P23771 443 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 GLP1RP43220 463 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 PRB3Q04118 309 aaPredicted RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 MEF2CQ06413 473 aaPredicted RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 MADCAM1Q13477 382 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 CR1LQ2VPA4 569 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 C11orf91Q3C1V1 193 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 METTL11BQ5VVY1 283 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 SLC35E4Q6ICL7 350 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 ZNF497Q6ZNH5 498 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 TCF23Q7RTU1 214 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 OR4K15Q8NH41 348 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 PCGF1Q9BSM1 259 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 TMPRSS13Q9BYE2 586 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 CHMP1AQ9HD42 196 aaPredicted RBP9.8□□□□□ -0.84
CUX1-210ENST00000497815 LPAR3Q9UBY5 353 aa9.8□□□□□ -0.84
CUX1-210ENST00000497815 AK3Q9UIJ7 227 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms